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Adding phylum Myzozoa to dataset

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mdoering committed Jan 17, 2017
1 parent ff39658 commit afccc623414b7ff2be715bcce1e64fc1aa97ca86
Showing with 237 additions and 9 deletions.
  1. +6 −7 README.md
  2. +231 −2 algae.txt
@@ -1,9 +1,9 @@
# GBIF Algae Classification
A classification for [all algae from kingdom down to families](algae.txt) distributed across the 3 kingdoms Plantae, Chromista and Protozoa.
A classification for [all algae sensu latu from kingdom down to families](algae.txt) distributed across the 3 kingdoms Plantae, Chromista and Protozoa.
The project is setup so that the github zip represents a valid Darwin Core Checklist Archive, synonyms are included.

This classification is aiming to fill the algae gaps in the current Catalog of Life which has no taxa within the following phyla:
- Chromista: Cryptophyta, Haptophyta, Ochrophyta
This classification is aiming to fill the gaps in the current Catalog of Life due to the removal of Algaebase. The CoL currently has no taxa within the following phyla:
- Chromista: Cryptophyta, Haptophyta, Ochrophyta, Myzozoa
- Plantae: Charophyta, Chlorophyta, Glaucophyta, Rhodophyta
- Protozoa: Euglenozoa

@@ -23,7 +23,7 @@ Chromista
*Cryptista
Foraminifera
*Haptophyta
Miozoa
*Miozoa
*Ochrophyta
Oomycota
Radiozoa
@@ -59,6 +59,8 @@ For Protozoa we will only treat the "algae" phylum Euglenozoa:
- Cryptista aka Cryptophyta
- Haptophyta
- Ochrophyta
- Myzozoa (preferred over Miozoa, see [WoRMS](http://www.marinespecies.org/aphia.php?p=taxdetails&id=450030) and [Wikipedia](https://en.wikipedia.org/wiki/Myzozoa))
- Cercozoa
- Plantae
- Charophyta
- Chlorophyta
@@ -77,9 +79,6 @@ Classification down to families: [plantae](itis/itis-plantae.md), [chromista](it
### WoRMS
Classification down to families for the kingdoms: [plantae](worms/worms-3.txt), [chromista](worms/worms-7.txt) & [protozoa](worms/worms-5.txt)

### Algaebase
Hard to access and the bad guy who requested removal from CoL and prevends WoRMS from sharing

### Ruggiero 2015
See [PLOS article 10.1371/journal.pone.0119248](http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0119248)
Also available as strangely formatted [Excel spreadsheet](journal.pone.0119248.s002.XLSX).
233 algae.txt
@@ -1,4 +1,4 @@
taxonID parentID acceptedID taxonRank scientificName isExtinct isMarine isTerrestrial isFreshwater
taxonID parentNameUsageID acceptedNameUsageID taxonRank scientificName isExtinct isMarine isTerrestrial isFreshwater
1 Kingdom Plantae 1
100 1 Phylum Charophyta 1
1000 100 Class Charophyceae 1
@@ -978,10 +978,239 @@ taxonID parentID acceptedID taxonRank scientificName isExtinct isMarine isTerres
1069 113 Class Placidiophyceae
10875 1069 Order Placidiales

450030 3 Phylum Myzozoa
450030b 450030 Phylum Miozoa
13 450030 Subphylum Mastigophora 1
22565 450030 Subphylum Apicomplexa 1 1 1
591163 22565 Class Apicomonadea
591165 591163 Order Acrocoelida
591166 591163 Order Colpodellida
591164 22565 Order Chromerida
582464 22565 Class Aconoidasida
562845 582464 Class Haematozoa 1 1 1
591168 582464 Order Haemospororida
722976 591168 Family Plasmodiidae
562847 582464 Order Piroplasmorida 1 1 1
562848 562847 Family Haemohormidiidae 1 0 0
394011 22565 Class Conoidasida
582463 394011 Subclass Coccidiasina
562794 582463 Class Coccidea 1 1 1
562795 582463 Order Agamococcidiorida 1 0 0
562796 562795 Family Gemmocystidae 1 0 0
562798 562795 Family Rhytidocystidae 1 0 0
394012 582463 Order Eucoccidiorida 1 1 1
394013 394012 Suborder Adeleorina 1 1 1
562809 394013 Family Adeleidae 1 1 1
394014 394013 Family Haemogregarinidae 1 1 1
562814 394012 Suborder Eimeriorina 1 0 1
391853 562814 Family Aggregatidae 1 0 0
562822 562814 Family Calyptosporidae 1 0 0
562824 562814 Family Caryotrophidae 1 0 0
391924 562814 Family Cryptosporidiidae 1 0 1
562827 562814 Family Dactylosomatidae 1 0 1
562830 562814 Family Dobellidae 1 0 0
562832 562814 Family Eimeriidae 1 1 1
562841 562814 Family Sarcocystidae 1 1 1
562843 562814 Family Selenococcidiidae 1 0 0
591167 582463 Order Ixorheorida
562801 582463 Order Protococcidiorida 1 0 0
562802 562801 Family Eleutheroschizonidae 1 0 0
562806 562801 Family Grelliidae 1 0 0
562673 394011 Subclass Gregarinasina 1 1 1
562672 562673 Class Gregarinea 1 1 1
562674 562673 Order Archigregarinorida 1 0 0
562675 562674 Family Exoschizonidae 1 0 0
562677 562674 Family Selenidioididae 1 0 0
394869 562673 Order Eugregarinorida 1 1 1
562682 394869 Suborder Aseptatorina 1 0 0
562683 562682 Family Aikinetocystidae 1 0 0
562688 562682 Family Ganymedidae 1 0 1
562693 562682 Family Lecudinidae 1 0 0
562731 562682 Family Monocystidae
562734 562682 Family Selenidiidae 1 0 0
562747 562682 Family Urosporidae 1 0 0
562760 394869 Suborder Blastogregarinorina 1 0 0
562761 562760 Family Siedleckiidae 1 0 0
394870 394869 Suborder Septatorina 1 1 1
562763 394870 Family Actinocephalidae 1 1 1
394872 394870 Family Cephaloidophoridae 1 0 1
562768 394870 Family Cephalolobidae 1 0 0
562771 394870 Family Didymophoridae
562773 394870 Family Gregarinidae 1
562777 394870 Family Metameridae 1
394871 394870 Superfamily Porosporicae
465333 394870 Family Porosporidae 1 0 0
562786 394870 Family Uradiophoridae 1 0 1
562793 562673 Order Neogregarinorida
562620 450030 Subphylum Dinozoa
562668 562620 Order Chytridiodinida 1 0 0
577294 562620 Family Adnatosphaeridiaceae
577373 562620 Family Aeroligeraceae
19542 562620 Class Dinophyceae 1
147418 19542 Order Dinoflagellida 1
21005 19542 Phylum Dinophyta 1
590355 19542 Class Pyrrophyta
231760 19542 Order Actiniscales 1
591145 231760 Order Actiniscida
109409 231760 Family Actiniscaceae 1
744375 19542 Order Amphilothales
744376 744375 Family Amphilothaceae
109386 19542 Order Blastodiniales 1
562636 109386 Order Blastodinida 1 0 1
562637 109386 Family Apodinidae 1 0 0
562640 109386 Family Blastodinidae 1 0 0
562644 109386 Family Diplomorphidae 1 0 0
562649 109386 Family Haplozoonidae 1 0 0
345493 109386 Family Oodiniaceae 1
562652 109386 Family Oodinidae 1 0 0
562659 109386 Family Paradinophycidae 1 0 0
231767 19542 Order Brachidiniales 1
146214 231767 Order Brachydiniales 1
493844 19542 Order Coccidiniales
591146 493844 Order Coccidinida
109400 493844 Family Chytriodiniaceae 1
577497 493844 Family Syndiniaceae
599630 19542 Order Desmomastigales
599631 599630 Family Desmomastigaceae
599632 599630 Family Protaspidaceae
599633 599630 Family Spiromonadaceae
836378 19542 Family Haplozoonaceae
146204 19542 Subclass Dinophycidae 1
109390 19542 Order Dinophysiales 1
591154 109390 Order Dinophysida
109405 109390 Family Amphisoleniaceae 1
231771 109390 Family Citharistaceae 1
231772 109390 Family Dinophysaceae 1
162493 231772 Family Dinophysidae 1
109406 109390 Family Dinophysiaceae 1
231781 109390 Family Oxyphysaceae
146206 19542 Subclass Ebriophycidae 1
146210 19542 Subclass Ellobiophycidae 1
109391 19542 Order Gonyaulacales 1
591157 109391 Order Gonyaulacida
231796 109391 Family Amphidomataceae 1
109421 109391 Family Ceratiaceae 1
109422 109391 Family Ceratocoryaceae 1
109425 109391 Family Cladopyxidaceae 1
109408 109391 Family Goniodomataceae 1
109439 109408 Family Triadiniaceae 1
109428 109391 Family Gonyaulacaceae 1
109429 109391 Family Heterodiniaceae 1
109431 109391 Family Ostreopsidaceae 1
836360 109391 Family Protoceratiaceae
109436 109391 Family Pyrophacaceae 1
109392 19542 Order Gymnodiniales 1
591158 109392 Order Gymnodiniida
231768 109392 Family Brachidiniaceae 1
109443 231768 Family Brachydiniaceae 1
109410 109392 Family Gymnodiniaceae 1
155552 109410 Family Gymnodiniidae
599662 109392 Family Hemidiniaceae
599664 109392 Family Kareniaceae
109413 109392 Family Polykrikaceae 1
150278 109413 Family Polykrikidae
162515 109392 Family Pronoctilucaceae
178558 162515 Family Pronoctilucidae
146249 109392 Family Ptychodiscaceae 1
577245 109392 Family Tovelliaceae
109415 109392 Family Warnowiaceae 1
368684 19542 Order Lophodiniales 1
591148 368684 Order Lophodinida
109412 368684 Family Lophodiniaceae 1
150280 109412 Family Lophodiniidae
109393 19542 Order Noctilucales 1
591144 109393 Order Noctilucida
146252 109393 Family Kofoidiniaceae 1
109417 109393 Family Leptodiscaceae 1
109418 109393 Family Noctilucaceae 1
231795 109393 Family Protodiniferaceae 1
146254 19542 Order Oxyrrhinales 1
591162 146254 Order Oxyrrhida
146255 146254 Family Oxyrrhinaceae 1
109394 19542 Order Peridiniales 1
591151 109394 Order Peridiniida
109419 109394 Family Archaesphaerodiniopsidaceae 1
109420 109394 Family Calciodinellaceae 1
599684 109394 Family Centrodiniaceae
231797 109394 Family Ceratocorythaceae 1
109423 109394 Family Ceratoperidiniaceae 1
593652 109394 Family Congruentidiaceae
109426 109394 Family Crypthecodiniaceae 1
109427 109394 Family Dinosphaeraceae 1
146253 109394 Family Glenodiniaceae 1
370356 109394 Family Glenodiniopsidaceae 1
231800 109394 Family Heterocapsaceae 1
109430 109394 Family Kolkwitziellaceae 1
493895 109394 Family Lessardiaceae
109432 109394 Family Oxytoxaceae 1
150284 109432 Family Oxytoxidae
109433 109394 Family Peridiniaceae 1
150282 109433 Family Peridiniidae
246596 109394 Family Pfiesteriaceae 1
836367 109394 Family Phthanoperidiniaceae
109434 109394 Family Podolampaceae 1
231806 109394 Family Podolampadaceae 1
109435 109394 Family Protoperidiniaceae 1
231846 109435 Family Diplopsaliaceae
231845 109435 Family Kolkwitziellaceae
109437 109394 Family Thecadiniaceae 1
493845 19542 Subclass Peridiniphycidae
109395 19542 Order Phytodiniales 1
109396 19542 Order Prorocentrales 1
591152 109396 Order Prorocentrida
231849 109396 Family Haplodiniaceae
109442 109396 Family Prorocentraceae 1
150274 109442 Family Prorocentridae
109398 19542 Order Pyrocystales 1
591149 109398 Order Pyrocystida
109444 109398 Family Pyrocystaceae 1
109399 19542 Order Suessiales 1
591160 109399 Order Suessiida
599712 109399 Family Biecheleriaceae
599713 109399 Family Borghiellaceae
231813 109399 Family Suessiaceae
109445 109399 Family Symbiodiniaceae 1
146213 19542 Order Syndiniales 1
582437 146213 Order Syndinida
109401 146213 Family Amoebophryaceae 1
562663 146213 Family Syndinidae 1 0 0
146212 146213 Suborder Syndiniophycidae 1
836374 19542 Family Thalassomycetaceae
146211 19542 Order Thalassomycetales 1
231814 19542 Order Thoracosphaerales 1
591150 231814 Order Thoracosphaeida
109438 231814 Family Thoracosphaeraceae 1
591143 562620 Class Noctilucea
562634 562620 Class Peridinea 1 0 1
591147 562634 Order Dinamoebida
599634 591147 Family Dinamoebaceae
591153 562634 Subclass Dinophysoidia
591155 591153 Order Nannoceratopsida
591156 562634 Subclass Gonyaulacoidia
591161 562634 Subclass Oxyrrhia
562635 562634 Subclass Peridinoidia 1 0 1
591159 562634 Subclass Suessioidia
562662 562620 Class Syndinea
591136 562620 Class Colponemea
591138 591136 Order Algovorida
591137 591136 Order Colponemida
562624 562620 Class Ellobiopsea 1 0 0
562625 562624 Order Ellobiopsida 1 0 0
562626 562625 Family Ellobiopsidae 1 0 0
160466 562626 Family Ellobiospidae
591139 562620 Class Myzomonadea
591140 591139 Order Chilovorida
591141 591139 Order Voromonadida
178968 562620 Class Perkinsea 1
103337 178968 Class Perkinsasida 1
591142 178968 Order Perkinsida
103338 591142 Order Perkinsorida 1
103339 591142 Family Perkinsidae 1 0 0

pc1 3 Phylum Cercozoa
pc2 pc1 Class Chlorarachniophyceae Hibberd & Norris, 1984
pc2b pc2 Class Chlorarachnea
pc3 pc2 Order Chlorarachniales
pc3 pc2 Order Chlorarachniales
pc3b pc3 Order Chlorachniida
pc4 pc3 Family Chlorarachniaceae Ishida & Y. Hara, 1996
pc4b pc4 Family Chlorarachniidae Hibberd & Norris, 1984

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