{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":702884767,"defaultBranch":"main","name":"phold","ownerLogin":"gbouras13","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-10-10T07:39:58.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/84495559?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1712552595.0","currentOid":""},"activityList":{"items":[{"before":"e3a4ff86ededbebc75b104c48b5366c2471eb26f","after":"9b9dddd9266fb056c3b472224272a699da0925a5","ref":"refs/heads/clusterdb","pushedAt":"2024-05-22T13:06:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"add backup zenodo download for if huggingface is down","shortMessageHtmlLink":"add backup zenodo download for if huggingface is down"}},{"before":"58822a9aafc81e2a29eab52c8ee8e227c2664096","after":"e3a4ff86ededbebc75b104c48b5366c2471eb26f","ref":"refs/heads/clusterdb","pushedAt":"2024-05-19T14:49:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"batch4 stack issue","shortMessageHtmlLink":"batch4 stack issue"}},{"before":"25c35baef653523d21ccc753ccf32bf51c9fa9aa","after":"58822a9aafc81e2a29eab52c8ee8e227c2664096","ref":"refs/heads/clusterdb","pushedAt":"2024-05-19T14:46:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"batch3 stack issue","shortMessageHtmlLink":"batch3 stack issue"}},{"before":"b2a7cccc86c36104b58b2ebe409ff053bc1adc94","after":"25c35baef653523d21ccc753ccf32bf51c9fa9aa","ref":"refs/heads/clusterdb","pushedAt":"2024-05-19T14:40:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"batch2","shortMessageHtmlLink":"batch2"}},{"before":"bbbf9515e446fbec014faa1959bfa9228e535343","after":"b2a7cccc86c36104b58b2ebe409ff053bc1adc94","ref":"refs/heads/clusterdb","pushedAt":"2024-05-19T14:39:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"batch","shortMessageHtmlLink":"batch"}},{"before":"cc7ac739a15b17e8f772864173b14958048048dc","after":"bbbf9515e446fbec014faa1959bfa9228e535343","ref":"refs/heads/clusterdb","pushedAt":"2024-05-19T14:32:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"try reduce memroy usage2","shortMessageHtmlLink":"try reduce memroy usage2"}},{"before":"09a679dce1ea8c89d9aa34b207fe1fb3fc2b30de","after":"cc7ac739a15b17e8f772864173b14958048048dc","ref":"refs/heads/clusterdb","pushedAt":"2024-05-19T14:29:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"try reduce memroy usage","shortMessageHtmlLink":"try reduce memroy usage"}},{"before":"f476447fd41155c7b3d5fb427f74bfc112a4f719","after":"09a679dce1ea8c89d9aa34b207fe1fb3fc2b30de","ref":"refs/heads/clusterdb","pushedAt":"2024-05-19T14:24:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"revert batching","shortMessageHtmlLink":"revert batching"}},{"before":"07851ff1d73c3324b56371fec76bc9cbbf541712","after":"f476447fd41155c7b3d5fb427f74bfc112a4f719","ref":"refs/heads/clusterdb","pushedAt":"2024-05-19T14:09:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"add batching2","shortMessageHtmlLink":"add batching2"}},{"before":"5a83e02f62fee09e8016ca957b62578013d57642","after":"07851ff1d73c3324b56371fec76bc9cbbf541712","ref":"refs/heads/clusterdb","pushedAt":"2024-05-19T14:06:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"add batching","shortMessageHtmlLink":"add batching"}},{"before":"786763c00716b55ef153bf1f2fabe4e7800b9530","after":"5a83e02f62fee09e8016ca957b62578013d57642","ref":"refs/heads/clusterdb","pushedAt":"2024-05-19T12:58:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"eat post processing","shortMessageHtmlLink":"eat post processing"}},{"before":"aad42f0ab9e505b2e6c312407768b787d6e45164","after":"786763c00716b55ef153bf1f2fabe4e7800b9530","ref":"refs/heads/clusterdb","pushedAt":"2024-05-16T09:28:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"fix write_embeddings for proteins","shortMessageHtmlLink":"fix write_embeddings for proteins"}},{"before":"1e0f3d52f87e55a333c43843cbdee19b11ee5008","after":"aad42f0ab9e505b2e6c312407768b787d6e45164","ref":"refs/heads/clusterdb","pushedAt":"2024-05-13T16:48:50.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"add --eat_threshold","shortMessageHtmlLink":"add --eat_threshold"}},{"before":"0af78ee2a7bf0e36117ac4f869cd7f79915cd022","after":"1e0f3d52f87e55a333c43843cbdee19b11ee5008","ref":"refs/heads/clusterdb","pushedAt":"2024-05-13T16:26:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"add EAT capabilities","shortMessageHtmlLink":"add EAT capabilities"}},{"before":"9a5e4faebda1cbe70cdce38cc8b256860b8ff98c","after":"0af78ee2a7bf0e36117ac4f869cd7f79915cd022","ref":"refs/heads/clusterdb","pushedAt":"2024-05-08T13:50:14.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"add support for genbank formatted input","shortMessageHtmlLink":"add support for genbank formatted input"}},{"before":"3d3f7100b7c9d4051d41aa5230cc160dc09830a4","after":"0f7b2836c44dc6d8aad17f4157ccb59f7d79f104","ref":"refs/heads/main","pushedAt":"2024-04-23T07:27:23.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"Merge pull request #38 from gbouras13/dev\n\nAdd Phynteny to colab notebook and readme","shortMessageHtmlLink":"Merge pull request #38 from gbouras13/dev"}},{"before":"98ccaded1b065eb38483fc24886029d8724bd007","after":"375398844780b20ed48e0283a8bb4e5f404cef57","ref":"refs/heads/dev","pushedAt":"2024-04-23T07:26:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"update readme and remove old notebook","shortMessageHtmlLink":"update readme and remove old notebook"}},{"before":"3f8d6868d9c23a0a8b0c40cf6666101f93876bcf","after":"98ccaded1b065eb38483fc24886029d8724bd007","ref":"refs/heads/dev","pushedAt":"2024-04-23T07:24:14.000Z","pushType":"push","commitsCount":9,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"updated notebook links","shortMessageHtmlLink":"updated notebook links"}},{"before":"2488f0257f9a5fdd83f717c9a51a4457918fdc2e","after":"3d3f7100b7c9d4051d41aa5230cc160dc09830a4","ref":"refs/heads/main","pushedAt":"2024-04-23T07:22:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"Update run_phold.ipynb to v0.1.4","shortMessageHtmlLink":"Update run_phold.ipynb to v0.1.4"}},{"before":"d967052d0be07f07f0264ee4e2fa23f0f2583a9e","after":"2488f0257f9a5fdd83f717c9a51a4457918fdc2e","ref":"refs/heads/main","pushedAt":"2024-04-23T07:19:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"Created using Colab","shortMessageHtmlLink":"Created using Colab"}},{"before":"518152bd4d315908c22cbe1be31840edf41121ca","after":"d967052d0be07f07f0264ee4e2fa23f0f2583a9e","ref":"refs/heads/main","pushedAt":"2024-04-23T07:09:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"Created using Colab","shortMessageHtmlLink":"Created using Colab"}},{"before":"41f70a5cfe3c9ce8007c4f5b274c0b543b97653b","after":"9a5e4faebda1cbe70cdce38cc8b256860b8ff98c","ref":"refs/heads/clusterdb","pushedAt":"2024-04-09T13:39:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"add --cluster_db","shortMessageHtmlLink":"add --cluster_db"}},{"before":"2e8e6e58ec3995801522ba5d41a233b2272445fe","after":"41f70a5cfe3c9ce8007c4f5b274c0b543b97653b","ref":"refs/heads/clusterdb","pushedAt":"2024-04-09T01:36:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"change target_db for cluster search","shortMessageHtmlLink":"change target_db for cluster search"}},{"before":"2426ca2736ae5ad7c8a26bd143e968c0524c43e5","after":"2e8e6e58ec3995801522ba5d41a233b2272445fe","ref":"refs/heads/clusterdb","pushedAt":"2024-04-09T00:57:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"add --ultra_sensitive 2","shortMessageHtmlLink":"add --ultra_sensitive 2"}},{"before":"207de4545567c0795f90816708b095a18aafb114","after":"2426ca2736ae5ad7c8a26bd143e968c0524c43e5","ref":"refs/heads/clusterdb","pushedAt":"2024-04-09T00:55:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"add --ultra_sensitive","shortMessageHtmlLink":"add --ultra_sensitive"}},{"before":"5a16d5982a10e305d94e0573c861235235997ffa","after":"207de4545567c0795f90816708b095a18aafb114","ref":"refs/heads/clusterdb","pushedAt":"2024-04-08T05:36:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"tidy up results parsing","shortMessageHtmlLink":"tidy up results parsing"}},{"before":"2341d0f27fe482e6c84b9afc6729f6351cc1ffb4","after":"5a16d5982a10e305d94e0573c861235235997ffa","ref":"refs/heads/clusterdb","pushedAt":"2024-04-08T05:08:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"try clustersearch 2","shortMessageHtmlLink":"try clustersearch 2"}},{"before":null,"after":"2341d0f27fe482e6c84b9afc6729f6351cc1ffb4","ref":"refs/heads/clusterdb","pushedAt":"2024-04-08T05:03:15.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"try clustersearch","shortMessageHtmlLink":"try clustersearch"}},{"before":"4947cd08e0609ac5ea142a2aaff2247230b1dea2","after":"518152bd4d315908c22cbe1be31840edf41121ca","ref":"refs/heads/main","pushedAt":"2024-04-08T04:37:18.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"Merge pull request #35 from gbouras13/dev\n\nadd tests for embeddings","shortMessageHtmlLink":"Merge pull request #35 from gbouras13/dev"}},{"before":"fa57a72a6f333ea68b56cac303aaf648dc143f3f","after":"3f8d6868d9c23a0a8b0c40cf6666101f93876bcf","ref":"refs/heads/dev","pushedAt":"2024-04-08T04:36:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbouras13","name":"George Bouras","path":"/gbouras13","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/84495559?s=80&v=4"},"commit":{"message":"add tests for embeddings","shortMessageHtmlLink":"add tests for embeddings"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEUPM-TwA","startCursor":null,"endCursor":null}},"title":"Activity ยท gbouras13/phold"}