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README

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#	SpaceMix ReadMe
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PREAMBLE
Caveat user: this code is still in beta.  Please contact
Gideon Bradburd at gbradburd(at)ucdavis(dot)edu with bug
reports or questions.  Please thoroughly read the 
documentation and go through the vignette first to make sure 
your question has not already been addressed.

Also, remember to check the git for updates!

README
This repository contains the R package SpaceMix and accompanying 
vignette.  To install the package you can either:

(1) download the .tar.gz file and install using 

> install.packages("~/SpaceMix_X.tar.gz",repos=NULL)

where "X" in the package name denotes the number of 
the most current version.

OR

(2) install directly from github using 

> require(devtools)
> install_github("gbradburd/SpaceMix",build_vignettes=TRUE)

You can then look at the vignette with 

> vignette("spacemix_vignette")

and you can see all documented functions using 

> ??SpaceMix

The citation for this paper is:
Bradburd GS, Ralph PL, Coop GM (2016) A Spatial Framework for Understanding Population Structure and Admixture. PLoS Genet 12(1): e1005703

and the DOI link is below:
http://dx.doi.org/10.1371/journal.pgen.1005703