geo<-read.table("individualGPS", sep="\t") sample.names<-geo$V1 sample.names<-as.matrix(sample.names) new.geo<-geo[,2:3] new.geo<-as.matrix(new.geo) colors <- as.vector(c(rep("gray56", 10), rep("dodgerblue3", 4), rep("purple", 2), rep("cyan", 22), rep("green", 10))) subsetOutput<-make.spacemix.map.list(MCMC.output.file = "run_246935/indiaWide_SNPs_LongRun/indiaWide_SNPs_space_MCMC_output1.Robj", geographic.locations = new.geo, name.vector = sample.names, color.vector = colors, quantile = 0.95, burnin = 0)