GEAR

Repositories

• apps-page

  GEAR home page
  Vue 0 0 0 1 Updated Oct 28, 2020

• terms-of-use
  0 0 0 0 Updated Oct 28, 2020

• ancient

  Ancestry inference with convolutional neural networks

  machine-learning tensorflow sequencing ancestry convolutional-neural-networks ancestry-research snp-genotyping
  Vue GPL-3.0 2 6 0 0 Updated Oct 28, 2020

• tracy

  Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

  sequencing alignment crispr-analysis variant-calling pcr tracy crispr-cas9
  C++ BSD-3-Clause 5 27 2 0 Updated Sep 17, 2020

• pearl

  Patching references via trace assemblies
  JavaScript GPL-3.0 0 1 2 0 Updated Jul 31, 2020

• bgen

  Barcode Generator

  genomics dna high-throughput-sequencing dna-sequences dna-sequencing dna-barcode gear-genomics
  JavaScript GPL-3.0 1 0 0 0 Updated Jul 31, 2020

• sabre

  Sequence Alignment Browser

  visualization research genomics dna alignment sequence gear-genomics
  JavaScript 1 3 0 0 Updated Jul 31, 2020

• saint

  [WIP] saint (similarity hunter): Rapid DNA similarity search against entire genomes.
  JavaScript 1 2 0 0 Updated Jul 31, 2020

• indigo

  Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

  sequencing variants alignment crispr-analysis indigo variant-calling pcr
  JavaScript GPL-3.0 4 14 0 0 Updated Jul 30, 2020

• teal

  Sanger Trace Viewer

  trace pcr sanger-chromatograms sanger gear-genomics
  JavaScript GPL-3.0 0 2 1 0 Updated Jul 30, 2020

• gearlog
  Python 0 0 0 2 Updated Jul 30, 2020

• silica

  In-silico PCR amplification on complete genomes

  primer pcr amplicon primer-design gear-genomics in-silico sanger-sequencing
  JavaScript GPL-3.0 0 2 0 2 Updated Jul 30, 2020

• halo

  haplotype processor
  C++ GPL-3.0 1 3 0 1 Updated Jul 30, 2020

• sage

  Sanger Trace Alignment

  trace alignment pcr sanger-chromatograms chromatogram gear-genomics sanger-trace-alignment
  JavaScript GPL-3.0 0 1 0 1 Updated Jul 30, 2020

• dicey

  In-silico PCR and variant primer design

  primer pcr amplicon primer-design amplicon-sequencing gear-genomics in-silico
  C++ BSD-3-Clause 1 8 0 0 Updated Jun 24, 2020

• salt

  Forked from lh3/bioseq-js

  Sequence Alignment Tool

  dna alignment dna-sequences pairwise-alignment gear-genomics
  JavaScript 8 0 0 0 Updated Feb 20, 2020

• wily-dna-editor

  The Wily-DNA-Editor is a browser tool for plasmid assembly, reverse complements DNA, translates to protein code and calculates restriction digests maps.

  gear-genomics
  JavaScript GPL-3.0 0 3 0 0 Updated Feb 5, 2020

• bistro

  bistro: barcode distribution

  genomics sequencing dna dna-barcode gear-genomics
  HTML 1 0 0 0 Updated Sep 17, 2019

• rdml-tools

  Forked from RDML-consortium/rdml-tools

  A collection of web applications to visualize, edit and validate RDML files.
  JavaScript GPL-3.0 1 0 0 0 Updated Aug 22, 2019

• primer3plus

  Forked from primer3-org/primer3plus

  Primer3Plus is an advanced web interface for primer3.
  Perl GPL-3.0 7 0 0 0 Updated Aug 22, 2019

• verdin

  Variant Primer Design

  genome variant-calling pcr primer-design gear-genomics
  Python GPL-3.0 0 0 0 0 Updated Jun 20, 2018