gemtools/gemtools

Update Readme.md - fix typo

Merge pull request #21 from gemtools/revert-20-master …

Revert "Temporarily fix the problem of baranserver domain"

Revert "Temporarily fix the problem of baranserver domain"

Merge pull request #20 from fransua/master …

Temporarily fix the problem of barnaserver domain

Temporarily fix the problem of baranserver domain

Merge pull request #18 from fransua/master …

fix the problem for installing.

easier to install

added resource build step to static build

bumperd download link in readme

Merge branch 'v1.7.1'

bumped version

added coverage stats calculation to gtfstats run in rnaseq pipeline

updated readme

fixed issue with single end reads and ID cleanup (#9)

Fixed custom output folder for compute transcriptome

Fixed float param option for exon overlap

added base counting to gtf gene counts

added workaround for gem-2-gem and qualities

fixed issue with space in empty qualities

Fixed typo

bumped version number to 1.7.1

pathed score function and paired to fix issue with fasta reads with n… …

…o qualities

Updated dowload links

Updated readme with 1.7 change log

Fixed issue with junction extraction from gtf where junctions of length …

0 were reported

Fix bug with uninitialized counters when length re-sized

Merge branch 'develop' of ssh://fenris.ti00a1.pcb.ub.es:7999/gt/gemto… …

…ols into develop

Fixed score in quimeras

Correct attributes bug

Merge branch 'develop' of ssh://fenris.ti00a1.pcb.ub.es:7999/gt/gemto… …

…ols into develop

Added changes to output_file

Merge branch 'develop' of ssh://fenris.ti00a1.pcb.ub.es:7999/gt/gemto… …

…ols into develop

correct multithreading bug

Merge branch 'develop' of ssh://fenris.ti00a1.pcb.ub.es:7999/gt/gemto… …

…ols into develop

Fixed score_read by making buffered_output local to each thread