Pinned repositories

  1. helpdesk

    The Gene Ontology Helpdesk

    1 2

  2. go-ontology

    Source ontology files for the Gene Ontology

    Shell 31 16

  3. go-annotation

    This repository hosts the tracker for issues pertaining to GO annotations.

    9 2

  4. noctua

    Graph-based modeling environment for biology, including prototype editor and services

    JavaScript 15 11

  5. amigo

    AmiGO is the public interface for the Gene Ontology.

    JavaScript 11 8

  6. go-site

    A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

    Perl 6 68

  • This is the data repository for the models created and edited with the Noctua tool stack for GO.

    Makefile 3 4 CC-BY-4.0 1 issue needs help Updated Jul 21, 2018
  • Repository for storing GO documentations, directly available through the general GO site (WIP)

    Updated Jul 21, 2018
  • AmiGO is the public interface for the Gene Ontology.

    JavaScript 11 8 BSD-3-Clause Updated Jul 20, 2018
  • GitHub repository for the NodeJS/Express REST web service go-api-sparql. Used for the front-end www.geneontology.org/gocam.

    JavaScript Updated Jul 20, 2018
  • Source ontology files for the Gene Ontology

    Shell 31 17 Updated Jul 20, 2018
  • A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

    Perl 6 68 BSD-3-Clause Updated Jul 19, 2018
  • Short form matrix view of all GO annotations for a given gene

    JavaScript 3 BSD-3-Clause Updated Jul 19, 2018
  • Tools and data for intersections/co-annotation checks in the Gene Ontology.

    JavaScript BSD-3-Clause Updated Jul 14, 2018
  • Declarative pipeline for the Gene Ontology.

    BSD-3-Clause Updated Jul 14, 2018
  • Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)

    Java Updated Jul 11, 2018
  • noctua entity ontology

    Perl 1 Updated Jul 9, 2018
  • Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.

    1 Updated Jul 2, 2018
  • Java 1 4 BSD-3-Clause 1 issue needs help Updated Jun 26, 2018
  • Basic and Advanced OBO Graphs: specification and reference implementation

    Java 17 7 Updated May 23, 2018
  • Home for GO SPARQL queries, templates, et al

    1 Updated May 12, 2018
  • Graph-based modeling environment for biology, including prototype editor and services

    JavaScript 15 11 BSD-3-Clause Updated May 12, 2018
  • Simple annoton editor workbench for Noctua.

    HTML 1 2 BSD-3-Clause Updated May 12, 2018
  • scala app for converting SynGO JSON to OWL (ttl) for loading into noctua

    Scala 1 Updated Apr 21, 2018
  • Gene Ontology API deployment

    2 1 Updated Apr 13, 2018
  • A repo for conversion of syngo JSON to GO-CAM OWL

    Python Updated Mar 17, 2018
  • This repository hosts the tracker for issues pertaining to GO annotations.

    9 2 Updated Mar 10, 2018
  • geneontology.github.io webpages.

    HTML CC0-1.0 Updated Jan 25, 2018
  • Jupyter notebooks for GO

    Jupyter Notebook Updated Jan 3, 2018
  • Sparql queries that validate

    Updated Oct 2, 2017
  • A repository for the development of patterns and terms for axiomatisation and refactoring of the GO MF branch

    Web Ontology Language 1 Updated Sep 30, 2017
  • Material for GO OWL/Protege Tutorial

    Web Ontology Language 10 8 Updated Sep 18, 2017
  • REPL environment for the Noctua annotation tool

    JavaScript BSD-3-Clause Updated Sep 12, 2017
  • Gene Ontology RDF GraphStore

    Makefile 1 3 Updated Sep 1, 2017
  • INCA Form (TermGenie2) for GO

    Updated Aug 16, 2017
  • A repository of GO design patterns

    Python Updated May 26, 2017