The Gene Ontology Consortium

Repositories

• go-ontology

  Source ontology files for the Gene Ontology

  go owl ontology obo
  Shell 20 71 690 14 Updated May 29, 2020

• geneontology.github.io

  Repository for storing GO documentation, directly available through the general GO site
  JavaScript MIT 7 1 19 6 Updated May 28, 2020

• wc-ribbon
  TypeScript 0 0 12 0 Updated May 28, 2020

• noctua-models

  This is the data repository for the models created and edited with the Noctua tool stack for GO.
  Makefile CC-BY-4.0 3 5 22 (1 issue needs help) 1 Updated May 28, 2020

• noctua-form
  TypeScript 0 0 48 0 Updated May 28, 2020

• noctua-form-base
  JavaScript 1 0 0 4 Updated May 27, 2020

• noctua

  Graph-based modeling environment for biology, including prototype editor and services
  JavaScript BSD-3-Clause 12 21 176 14 Updated May 28, 2020

• go-site

  A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
  Python BSD-3-Clause 78 19 260 21 Updated May 27, 2020

• pipeline

  Declarative pipeline for the Gene Ontology.
  BSD-3-Clause 2 0 47 1 Updated May 27, 2020

• go-shapes

  Schema for Gene Ontology Causal Activity Models defined using RDF Shapes
  Shell 0 0 30 (1 issue needs help) 4 Updated May 24, 2020

• minerva
  Java BSD-3-Clause 6 1 76 4 Updated May 24, 2020

• gaferencer

  Perform annotation deepening and satisfiability checking for GO annotations in GAFs
  Scala MIT 1 0 2 0 Updated May 22, 2020

• go-annotation

  This repository hosts the tracker for issues pertaining to GO annotations.
  5 15 488 3 Updated May 18, 2020

• noctua-landing-page
  TypeScript 0 0 9 0 Updated May 14, 2020

• amigo

  AmiGO is the public interface for the Gene Ontology.
  JavaScript BSD-3-Clause 9 17 155 9 Updated May 8, 2020

• gocamgen

  Base repo for constructing GO-CAM model RDF
  Python 0 0 37 1 Updated May 8, 2020

• signor2gocam

  Converting Signor pathways to GO-CAM
  Python 2 1 11 1 Updated May 1, 2020

• noctua-form-legacy

  Simple annoton editor workbench for Noctua.
  HTML BSD-3-Clause 2 2 31 5 Updated Apr 29, 2020

• pathways2GO

  Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
  Java 0 0 22 0 Updated Apr 25, 2020

• ribbon

  Short form matrix view of all GO annotations for a given gene
  JavaScript BSD-3-Clause 5 3 16 5 Updated Apr 16, 2020

• neo

  noctua entity ontology
  Perl 2 0 22 (1 issue needs help) 2 Updated Apr 8, 2020

• curie-util-py

  Python Library to translate CURIEs to IRIs and vice versa
  Python BSD-3-Clause 0 0 0 2 Updated Mar 31, 2020

• go-pombase

  Code for querying GO annotations for PomBase
  Python 0 0 2 0 Updated Mar 16, 2020

• noctua-search
  JavaScript 0 0 1 1 Updated Mar 16, 2020

• go-stats

  Compute statistics & changes for both the GO ontology and annotations
  Python BSD-3-Clause 0 0 5 0 Updated Mar 10, 2020

• obographs

  Basic and Advanced OBO Graphs: specification and reference implementation
  Java 10 31 39 3 Updated Mar 6, 2020

• helpdesk

  The Gene Ontology Helpdesk
  4 7 9 1 Updated Feb 29, 2020

• web-gocam

  GO-CAMs site as an Angular 2+ Application
  TypeScript BSD-3-Clause 0 1 8 (2 issues need help) 0 Updated Jan 10, 2020

• gocam-sif-pyexport

  Export GO-CAMs to SIF (Python)
  Python BSD-3-Clause 1 3 5 1 Updated Nov 21, 2019

• biolink-api

  Forked from biolink/biolink-api

  API for linked biological knowledge
  Python 18 1 5 0 Updated Oct 24, 2019