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This is the data repository for the models created and edited with the Noctua tool stack for GO.
Repository for storing GO documentations, directly available through the general GO site (WIP)
AmiGO is the public interface for the Gene Ontology.
GitHub repository for the NodeJS/Express REST web service go-api-sparql. Used for the front-end www.geneontology.org/gocam.
Source ontology files for the Gene Ontology
A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
Short form matrix view of all GO annotations for a given gene
Tools and data for intersections/co-annotation checks in the Gene Ontology.
Declarative pipeline for the Gene Ontology.
Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
noctua entity ontology
Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.
Basic and Advanced OBO Graphs: specification and reference implementation
Home for GO SPARQL queries, templates, et al
Graph-based modeling environment for biology, including prototype editor and services
Simple annoton editor workbench for Noctua.
scala app for converting SynGO JSON to OWL (ttl) for loading into noctua
Gene Ontology API deployment
A repo for conversion of syngo JSON to GO-CAM OWL
This repository hosts the tracker for issues pertaining to GO annotations.
Jupyter notebooks for GO
Sparql queries that validate
A repository for the development of patterns and terms for axiomatisation and refactoring of the GO MF branch
Material for GO OWL/Protege Tutorial
REPL environment for the Noctua annotation tool
Gene Ontology RDF GraphStore
INCA Form (TermGenie2) for GO
A repository of GO design patterns