This will eventually contain a rich set of Jupyter (ipython) notebooks that demonstrate how to programmatically obtain information and do useful analyses using GO ontologies and associations.
For optimal viewing, browse this folder using nbviewer .
Currently we only have one notebook, but more are coming! See pull requests for detail:
The notebooks can also be see in GitHub on the geneontology/go-notebooks
First check out this repo
pyvenv venv
source venv/bin/activate
export PYTHONPATH=.:$PYTHONPATH
pip install -r requirements.txt
jupyter notebook
This makes use of the OntoBio python library
See notebooks section on ReadTheDocs