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Jupyter Notebooks for GO

This will eventually contain a rich set of Jupyter (ipython) notebooks that demonstrate how to programmatically obtain information and do useful analyses using GO ontologies and associations.

Viewing the notebooks

For optimal viewing, browse this folder using nbviewer .

Currently we only have one notebook, but more are coming! See pull requests for detail:

The notebooks can also be see in GitHub on the geneontology/go-notebooks

Running or editing a notebook

First check out this repo

pyvenv venv
source venv/bin/activate
export PYTHONPATH=.:$PYTHONPATH
pip install -r requirements.txt
jupyter notebook

Python libraries

This makes use of the OntoBio python library

See notebooks section on ReadTheDocs

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