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NTR for HVC #12057

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michaelerice opened this Issue Sep 9, 2015 · 5 comments

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michaelerice commented Sep 9, 2015

Term: HVC

Definition: HVC is a nucleus in the brain of songbirds located in the caudal nidopallium, projecting to the song motor pathway via the robust nucleus of the arcopallium and to the Anterior Forebrain Pathway via the basal ganglia nucleus Area X.
https://en.wikipedia.org/wiki/HVC_(avian_brain_region)

formally called hyperstriatum ventrale, pars caudalis (HVc) and high vocal center

only in Passeriformes Taxon ID: 9126

GOC:mr

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cmungall commented Sep 9, 2015

Hi Michael

This is in the GO tracker. Do you need a developmental process term? Either way we should add the brain structure to Uberon. Are you likely to need other avian structures in the future?

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tberardini commented Sep 9, 2015

Yes, this 'nucleus' is an anatomical structure, not suited for GO.

Uberon github tracker: https://github.com/obophenotype/uberon/issues

Please close this issue if you do not require a GO term. Thanks.

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michaelerice commented Sep 9, 2015

?Thanks Chris,

I do not need a process term at this time, and I am not sure if I will need other avian structures in the future. If you would like to put a hold on this until I can compile a possible list of structure that is ok for me.

Mike


Michael E. Rice AgBase biocurator
School of Animal and Comparative Biomedical Sciences
Thomas W. Keating Bioresearch Building
1657 E. Helen St.
Tucson, AZ 85721
The College of Agriculture and Life Sciences
The University of Arizona
520 955-2745
mrice@email.arizona.eduhttp://mrice@email.arizona.edu


From: Chris Mungall notifications@github.com
Sent: Wednesday, September 9, 2015 1:01 PM
To: geneontology/go-ontology
Cc: Rice, Michael E - (mrice)
Subject: Re: [go-ontology] NTR for HVC (#12057)

Hi Michael

This is in the GO tracker. Do you need a developmental process term? Either way we should add the brain structure to Uberon. Are you likely to need other avian structures in the future?

Reply to this email directly or view it on GitHubhttps://github.com//issues/12057#issuecomment-139029885.

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tberardini commented Sep 9, 2015

I'll transfer your request to the Uberon tracker.

obophenotype/uberon#1145

Closing this one. Please open a new issue when you do need a GO process term. Thanks.

@tberardini tberardini closed this Sep 9, 2015

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michaelerice commented Sep 9, 2015

?Thank you


Michael E. Rice AgBase biocurator
School of Animal and Comparative Biomedical Sciences
Thomas W. Keating Bioresearch Building
1657 E. Helen St.
Tucson, AZ 85721
The College of Agriculture and Life Sciences
The University of Arizona
520 955-2745
mrice@email.arizona.eduhttp://mrice@email.arizona.edu


From: tberardini notifications@github.com
Sent: Wednesday, September 9, 2015 1:27 PM
To: geneontology/go-ontology
Cc: Rice, Michael E - (mrice)
Subject: Re: [go-ontology] NTR for HVC (#12057)

I'll transfer your request to the Uberon tracker.

obophenotype/uberon#1145obophenotype/uberon#1145

Closing this one. Please open a new issue when you do need a GO process term. Thanks.

Reply to this email directly or view it on GitHubhttps://github.com//issues/12057#issuecomment-139036530.

cmungall added a commit to obophenotype/uberon that referenced this issue Sep 9, 2015

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