SPARQL queries and pipeline for filtering "pathway-like" GO-CAM models and packaging into tarball
- Download and extract blazegraph-production.jnl.
- Git clone noctua-models and supply path to
noctua-modelsdirectory inNOCTUA_MODELS_PATHwhen runningmake.
NOCTUA_MODELS_PATH={path-to-noctua-models} make target/pathway-like_go-cams.tar.gz
This will execute the following steps:
- Download blazegraph-runner software
- Run SPARQL queries
- Compile results into a TSV (
pathway_like_go_cams.tsv) - Copy
.ttlmodel files fromnoctua-models/models/and package them intopathway-like_go-cams.tar.gz