Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Template for chemical entity binding #16

Closed
hdietze opened this issue Apr 6, 2015 · 2 comments
Closed

Template for chemical entity binding #16

hdietze opened this issue Apr 6, 2015 · 2 comments

Comments

@hdietze
Copy link
Collaborator

@hdietze hdietze commented Apr 6, 2015

Original issue 16 created by hdietze on 2012-01-10T16:04:44.000Z:

Hi,

Once the new TG can be used for chemical terms, could we please also have a template for chemical entity binding terms? E.g. flavonoid binding, see
https://sourceforge.net/tracker/index.php?func=detail&aid=3371569&group_id=36855&atid=440764

Many thanks,
Paola

@hdietze
Copy link
Collaborator Author

@hdietze hdietze commented Apr 6, 2015

Comment #1 originally posted by hdietze on 2012-01-10T17:34:10.000Z:

This will need to make use of logical definitions maintained outside the main ontology. See:

http://wiki.geneontology.org/index.php/Ontology_extensions

I propose we make the OWL file primary here. This will take a bit of engineering with TG as it needs to write to two sources: the main ontology and an extensions file (even more awkward if these are split across CVS and SVN, I think we should switch to SVN for the editors directory first).

Import goche or chebi? I think chebi and also import the axioms that state that every conjugate base is equivalent for the purposes of binding (go/extensions/bio-chebi.owl)

@hdietze
Copy link
Collaborator Author

@hdietze hdietze commented Apr 6, 2015

Comment #2 originally posted by hdietze on 2012-05-22T22:14:11.000Z:

chemical_binding pattern is ready for testing on the live system

@hdietze hdietze closed this Apr 6, 2015
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Linked pull requests

Successfully merging a pull request may close this issue.

None yet
1 participant
You can’t perform that action at this time.