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@genepattern

GenePattern

A Platform for Reproducible Bioinformatics

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  1. genepattern-notebook genepattern-notebook Public

    Platform for integrating genomic analysis with Jupyter Notebooks.

    Python 44 12

  2. genepattern-server genepattern-server Public

    The GenePattern Server web application

    HTML 36 17

  3. genepattern-python genepattern-python Public

    GenePattern Python Library

    Python 12 3

Repositories

Showing 10 of 242 repositories
  • tfsites.MapTfDNAInteractions Public

    Maps the crystal structure for a transcription factor

    genepattern/tfsites.MapTfDNAInteractions’s past year of commit activity
    Python 0 0 0 0 Updated Jan 15, 2025
  • common_module_code Public

    This repository contains the shared code used by the GenePattern modules.

    genepattern/common_module_code’s past year of commit activity
    0 0 0 0 Updated Jan 15, 2025
  • tfsites.NormalizeTfDNAAffinityData Public

    Farley lab UCSD collaboration

    genepattern/tfsites.NormalizeTfDNAAffinityData’s past year of commit activity
    0 0 0 0 Updated Jan 15, 2025
  • tfsites.common_docker Public

    Docker container for all the Farley lab tfsites suite of modules

    genepattern/tfsites.common_docker’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Jan 15, 2025
  • spatialGE.STplot Public
    genepattern/spatialGE.STplot’s past year of commit activity
    0 0 0 0 Updated Jan 14, 2025
  • AuDIT Public

    AuDIT module

    genepattern/AuDIT’s past year of commit activity
    R 0 BSD-3-Clause 0 0 0 Updated Jan 10, 2025
  • spatialGE.STgradient.Launcher Public

    Launch expression spatial gradients based on https://github.com/FridleyLab/spatialGE

    genepattern/spatialGE.STgradient.Launcher’s past year of commit activity
    JavaScript 0 0 0 0 Updated Jan 9, 2025
  • spatialGE.STclust Public

    SpatialGE STClust module.

    genepattern/spatialGE.STclust’s past year of commit activity
    R 0 0 0 0 Updated Jan 9, 2025
  • tfsites.FindTfSitesAlteredBySequenceVariation Public

    Farley Lab UCSD Collaboration

    genepattern/tfsites.FindTfSitesAlteredBySequenceVariation’s past year of commit activity
    Shell 0 BSD-3-Clause 0 0 0 Updated Jan 6, 2025
  • genepattern-server Public

    The GenePattern Server web application

    genepattern/genepattern-server’s past year of commit activity
    HTML 36 17 0 4 Updated Dec 18, 2024
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