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GenePattern

A Platform for Reproducible Bioinformatics

11 followers
San Diego, CA
http://genepattern.org/
@genepattern

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genepattern-notebook Public

Platform for integrating genomic analysis with Jupyter Notebooks.

Python 41 12
genepattern-server Public

The GenePattern Server web application

HTML 27 17
genepattern-python Public

GenePattern Python Library

Python 9 4

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AmpliconSuiteAggregator Public
Aggregates the results from AmpliconSuite

Python 0 3 0 0 Updated Jun 2, 2023
scGSEA Public

Python 0 1 0 0 Updated May 30, 2023
RandomForest Public
Random Forest, GenePattern - Mesirov Lab, UCSD

Python 1 0 0 0 Updated May 24, 2023
common_module_code Public
This repository contains the shared code used by the GenePattern modules.

0 0 0 0 Updated May 23, 2023
Harmony Public
Wrapper Script for Harmony designed to work with GenePattern Module Integrator

R 0 0 0 0 Updated May 18, 2023
genepattern-server Public
The GenePattern Server web application

HTML 27 17 0 4 Updated May 8, 2023
Kallisto Public
GenePattern Notebook running Kallisto

Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated May 8, 2023
AmpliconSuite Public
Wraps the AmpliconSuite-pipeline workflow to identify one or more connected genomic regions which have copy number amplifications.

Python 1 2 0 0 Updated Apr 26, 2023
nmf-gpu Public
GPU-optimized NMF and variations

Python 0 0 0 0 Updated Apr 26, 2023
NMFClustering Public
NMF consensus clustering implementation for SDSC Expanse GPU nodes

JavaScript 0 1 0 0 Updated Apr 26, 2023

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