CLUSTER data with Conos
Contact: Edwin Juárez ejuarez@ucsd.edu, Anthony Castanza acastanza@ucsd.edu
This is step 2 of 3 in the Conos pipeline. This module will read single cell data (e.g., count files) from different datasets and project each of those datasets into their own PCA space.
[Documentation incomplete]
More details in the original package: https://github.com/hms-dbmi/conos
The module ends by saving some variables to file:
# Save an object to a file
saveRDS(list(con=con,runleiden=runleiden,runwalktrap=runwalktrap), "conos_cluster_output.rds")
print('saved conos_cluster_output.rds')
Technical note:
This module uses the Conos Docker container vpetukhov/conos:version-1.1.1