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@bahill bahill released this Jun 26, 2019 · 2 commits to develop since this release

New Features & Bug Fixes

  • JobsResource cache bug fixes to keep Jobs tab and the Job Summary page in sync [GP-7493]
  • Job Summary page now automatically refreshes [GP-4782]
  • GenomeSpace logo removed from login page [GP-7769]

Prerequisites for Installing GenePattern

  • Java 1.8 or higher
  • Docker

Mac OS X Install

Download the 'GenePattern.app.zip' file. Unzip and launch the application. You will be prompted to enter some basic configuration details. Restart and you are up and running. The user data and customization files will be added to the '~/.genepattern' hidden folder in your home directory.

Linux Install

Download the 'GenePattern.bin' file. Then run the installer in headless mode.

Instructions can be found in '/gp_home/resources/installer_example.properties'

Assets 4

@liefeld liefeld released this Jun 19, 2019 · 3 commits to develop since this release

3.9.11rc-4+b225

modifying batch job delete query to conform to MySQL
Assets 3
Pre-release

@liefeld liefeld released this May 30, 2019 · 7 commits to develop since this release

add call to initRecentJobs() to update left pane when jaobs are delet…

…ed from the right pane using the checkboxes and button on the jobResultsPage
Assets 2
Pre-release

@liefeld liefeld released this May 28, 2019 · 9 commits to develop since this release

Fixes for jobCache and behaviour on jobResults and jobStatus pages when files are deleted

Assets 2

@liefeld liefeld released this May 17, 2019 · 17 commits to develop since this release

New Features & Bug Fixes

  • GenePattern Notebooks catalog tab added to the left-hand panel [GP-7672]
  • GenePattern Notebook information block added above the protocols [GP-7712]
  • FilePurger now removes files from the local file system and cleans up the corresponding files in S3 [GP-7115]

Prerequisites for Installing GenePattern

  • Java 1.8 or higher
  • Docker

Mac OS X Install

Download the 'GenePattern.app.zip' file. Unzip and launch the application. You will be prompted to enter some basic configuration details. Restart and you are up and running. The user data and customization files will be added to the '~/.genepattern' hidden folder in your home directory.

Linux Install

Download the 'GenePattern.bin' file. Then run the installer in headless mode.

Instructions can be found in '/gp_home/resources/installer_example.properties'

Assets 4
Apr 30, 2019
adding GPNB to main splash page

@liefeld liefeld released this Apr 30, 2019 · 21 commits to develop since this release

This release adds the Notebook tab to the left panel (with modules, files, genomespace etc) and adds a GPNB div to the splash page

Assets 4
Pre-release
Pre-release

@liefeld liefeld released this Feb 25, 2019 · 48 commits to develop since this release

GP-7580 Update stats api to use analysis_job_total view instead of analysis_job

Assets 3
Pre-release
Pre-release

@peterjcarr peterjcarr released this Jan 15, 2019 · 62 commits to develop since this release

Prerequisites

  • Java 1.8 or higher
  • Docker

Mac OS X Install

Download the 'GenePattern-3.9.11-b208.app.zip' file. Unzip and launch the application. You will be prompted to enter some basic configuration details. Restart and you are up and running. The user data and customization files will be added to the '~/.genepattern' hidden folder in your home directory.

Linux Install

Download the 'GenePattern-3.9.11-b208.bin' file. Then run the installer in headless mode.

step 1: create an installer.properties file

Example, /opt/genepattern/installer.properties

USER_INSTALL_DIR=/opt/genepattern/gp

INSTALLER_UI=silent
INSTALLER_TEMP_DIR=/tmp
IATEMPDIR=/tmp

step 2: run the installer

Example,

cd  /opt/genepattern
chmod u+x GPserver.bin
./GPserver.bin -f installer.properties
Assets 5

@peterjcarr peterjcarr released this Aug 17, 2018 · 129 commits to develop since this release

v3.9.11-pre.11+b199

fix for GP-7291, missing filelist in scatter-gather pipeline
Assets 4
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