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@liefeld liefeld released this Oct 21, 2019 · 9 commits to develop since this release

New throttle to limit the number of concurrent analyses a user could have in pending/running state. This is set by a parameter, max_simultaneous_jobs, in the config_custom.yaml which can be set for the entire server or per user as with other parameters. Default is 100 concurrent jobs if not otherwise specified.

New Features & Bug Fixes

  • New uploader for files >2GB (using resumable.js)
  • New throttle to limit the number of concurrent analyses a user could have in pending/running state. This is set by a parameter, max_simultaneous_jobs, in the config_custom.yaml which can be set for the entire server or per user as with other parameters. Default is 100 concurrent jobs if not otherwise specified.
  • All module repository urls in the configuration files have been update to reflect the new Module Repository URL: https://modulerepository.genepattern.org. Please see our blog post for more details regarding the specifics of these updates.

Prerequisites for Installing GenePattern

  • Java 8 or 9. Untested with Java 11.
  • Docker

Mac OS X Install

Download the 'GenePattern.app.zip' file. Unzip and launch the application. You will be prompted to enter some basic configuration details. Restart and you are up and running. The user data and customization files will be added to the '~/.genepattern' hidden folder in your home directory.

Note: GenePattern is currently experiencing Apple certificate issues. To install GenePattern you may need to enable applications from third-party developers. See the instructions here.

Linux Install

Download the 'GenePattern.bin' file. Then run the installer in headless mode.

Instructions can be found in '/gp_home/resources/installer_example.properties'

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