{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":46388888,"defaultBranch":"master","name":"resolwe-bio","ownerLogin":"genialis","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2015-11-18T02:11:58.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/2120224?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1719930042.0","currentOid":""},"activityList":{"items":[{"before":"ff4158f90d8658c403fb942012d08fdec44d3836","after":"1b34e61bb689f8ee42c5fdd4fc2e9a1020732929","ref":"refs/heads/master","pushedAt":"2024-07-01T14:26:54.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Bump twine version","shortMessageHtmlLink":"Bump twine version"}},{"before":"8e36e2ac66d54cd16d7c7dc84a25a5caa2f93323","after":"ff4158f90d8658c403fb942012d08fdec44d3836","ref":"refs/heads/master","pushedAt":"2024-06-20T13:33:52.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"gregorjerse","name":"Gregor Jerše","path":"/gregorjerse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4426582?s=80&v=4"},"commit":{"message":"Make tox syntax compatible with tox 4.0","shortMessageHtmlLink":"Make tox syntax compatible with tox 4.0"}},{"before":"37a637846ad55d35b5de721e471a875bb4fc1d28","after":"8e36e2ac66d54cd16d7c7dc84a25a5caa2f93323","ref":"refs/heads/master","pushedAt":"2024-06-17T13:23:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Prepare release 57.0.0","shortMessageHtmlLink":"Prepare release 57.0.0"}},{"before":"6c651fe4a4f72b81a261013440724a34eff9b4c2","after":"37a637846ad55d35b5de721e471a875bb4fc1d28","ref":"refs/heads/master","pushedAt":"2024-06-14T05:19:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Fix handling of multiple instances of STAR aligner input in\nthe MultiQC process","shortMessageHtmlLink":"Fix handling of multiple instances of STAR aligner input in"}},{"before":"1c5ef9962138134ff42c5e7c7b6d70f6688f87c4","after":"6c651fe4a4f72b81a261013440724a34eff9b4c2","ref":"refs/heads/master","pushedAt":"2024-06-13T19:54:35.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"gregorjerse","name":"Gregor Jerše","path":"/gregorjerse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4426582?s=80&v=4"},"commit":{"message":"Use simple_unaccent configuration when generating search vectors","shortMessageHtmlLink":"Use simple_unaccent configuration when generating search vectors"}},{"before":"570fcb7609efadd6798110c21a537d37d721c4f5","after":"1c5ef9962138134ff42c5e7c7b6d70f6688f87c4","ref":"refs/heads/master","pushedAt":"2024-06-03T15:37:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gregorjerse","name":"Gregor Jerše","path":"/gregorjerse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4426582?s=80&v=4"},"commit":{"message":"Do not run type checks on every pull request\n\nsince it fails and marks entire job as failed","shortMessageHtmlLink":"Do not run type checks on every pull request"}},{"before":"1f81297b7e03b5c25d10d5977decbd8d367da030","after":"570fcb7609efadd6798110c21a537d37d721c4f5","ref":"refs/heads/master","pushedAt":"2024-05-31T19:15:23.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Populate variant database from mutations-table process","shortMessageHtmlLink":"Populate variant database from mutations-table process"}},{"before":"37325ed195c0ef307772ec68d378a7e7d5be3543","after":"1f81297b7e03b5c25d10d5977decbd8d367da030","ref":"refs/heads/master","pushedAt":"2024-05-22T15:05:09.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"gregorjerse","name":"Gregor Jerše","path":"/gregorjerse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4426582?s=80&v=4"},"commit":{"message":"Remove support for Python 3.10","shortMessageHtmlLink":"Remove support for Python 3.10"}},{"before":"cc7e3abae378949299b5642dd6ddd2ff74674368","after":"37325ed195c0ef307772ec68d378a7e7d5be3543","ref":"refs/heads/master","pushedAt":"2024-05-17T17:55:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Use the updated version of xengsort tool in processes","shortMessageHtmlLink":"Use the updated version of xengsort tool in processes"}},{"before":"df139d1cccb6ede9fb4ef54d2942935eaf2c034e","after":"cc7e3abae378949299b5642dd6ddd2ff74674368","ref":"refs/heads/master","pushedAt":"2024-05-17T07:52:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gregorjerse","name":"Gregor Jerše","path":"/gregorjerse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4426582?s=80&v=4"},"commit":{"message":"Require Resolwe 40.x","shortMessageHtmlLink":"Require Resolwe 40.x"}},{"before":"aa2ad55d2fcac9578681a0763a1da0138cf8f750","after":"df139d1cccb6ede9fb4ef54d2942935eaf2c034e","ref":"refs/heads/master","pushedAt":"2024-05-13T11:44:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Prepare release 56.0.0","shortMessageHtmlLink":"Prepare release 56.0.0"}},{"before":"ae7871fa593f8e27d311de0dad0746670b8fc96a","after":"aa2ad55d2fcac9578681a0763a1da0138cf8f750","ref":"refs/heads/master","pushedAt":"2024-05-03T11:28:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Remove sample annotation functionality\n\nfrom ``geo-import`` process","shortMessageHtmlLink":"Remove sample annotation functionality"}},{"before":"6ea1c055569f3c5893988b09399aed269a9c832c","after":"ae7871fa593f8e27d311de0dad0746670b8fc96a","ref":"refs/heads/master","pushedAt":"2024-04-22T15:45:52.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"gregorjerse","name":"Gregor Jerše","path":"/gregorjerse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4426582?s=80&v=4"},"commit":{"message":"Update contributing documentation","shortMessageHtmlLink":"Update contributing documentation"}},{"before":"742fc3c70cf235dfad889f935608b69a7ec4d95d","after":"6ea1c055569f3c5893988b09399aed269a9c832c","ref":"refs/heads/master","pushedAt":"2024-04-18T09:18:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Use GRCh38.109 annotation database in snpEff","shortMessageHtmlLink":"Use GRCh38.109 annotation database in snpEff"}},{"before":"e72acee2c42fdc311c06fb0828d0e4b238062eac","after":"742fc3c70cf235dfad889f935608b69a7ec4d95d","ref":"refs/heads/master","pushedAt":"2024-04-16T12:05:41.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"gregorjerse","name":"Gregor Jerše","path":"/gregorjerse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4426582?s=80&v=4"},"commit":{"message":"Require Resolwe 39.x","shortMessageHtmlLink":"Require Resolwe 39.x"}},{"before":"0ab3895b1e95e580b6e160c8ad5e0bbc14c46ed1","after":"e72acee2c42fdc311c06fb0828d0e4b238062eac","ref":"refs/heads/master","pushedAt":"2024-04-16T08:09:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Rewrite Expression Aggregator process to Python","shortMessageHtmlLink":"Rewrite Expression Aggregator process to Python"}},{"before":"84be50825a81829a9c1fbe213d143ae0469fb208","after":"0ab3895b1e95e580b6e160c8ad5e0bbc14c46ed1","ref":"refs/heads/master","pushedAt":"2024-04-15T10:08:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Prepare release 54.4.0","shortMessageHtmlLink":"Prepare release 54.4.0"}},{"before":"29eb73ad5c2e62c56d5aa664ac33256b280fa48c","after":"84be50825a81829a9c1fbe213d143ae0469fb208","ref":"refs/heads/master","pushedAt":"2024-04-09T07:13:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gregorjerse","name":"Gregor Jerše","path":"/gregorjerse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4426582?s=80&v=4"},"commit":{"message":"Upgrade PostgreSQL used in tests to version 16","shortMessageHtmlLink":"Upgrade PostgreSQL used in tests to version 16"}},{"before":"f51184965d4c33729fa835ad19d4cd4575c13b9c","after":"29eb73ad5c2e62c56d5aa664ac33256b280fa48c","ref":"refs/heads/master","pushedAt":"2024-04-02T07:14:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Remove processes associated with 10x scRNA-seq\n\nProcesses removed are:\n``upload-sc-10x``\n``cellranger-count``\n``cellranger-mkref``","shortMessageHtmlLink":"Remove processes associated with 10x scRNA-seq"}},{"before":"9e5ee37f32c7b00001b510e67e23ae6999a0c26f","after":"f51184965d4c33729fa835ad19d4cd4575c13b9c","ref":"refs/heads/master","pushedAt":"2024-03-29T09:50:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Rename beta and remove legacy Cut&Run workflow","shortMessageHtmlLink":"Rename beta and remove legacy Cut&Run workflow"}},{"before":"58dcc7ecebeec2c6c4514febaa922272888e5bc3","after":"9e5ee37f32c7b00001b510e67e23ae6999a0c26f","ref":"refs/heads/master","pushedAt":"2024-03-26T15:49:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Add retry for reads prefetch in ``import-sra``","shortMessageHtmlLink":"Add retry for reads prefetch in import-sra"}},{"before":"d7986de9e6a8aff38dfe44c1123c9707a280515f","after":"58dcc7ecebeec2c6c4514febaa922272888e5bc3","ref":"refs/heads/master","pushedAt":"2024-03-26T13:39:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Remove ``RNA-SeQC`` from RNA-seq workflows","shortMessageHtmlLink":"Remove RNA-SeQC from RNA-seq workflows"}},{"before":"dc2281a3e067153af336c10cf9c0126a72848766","after":"d7986de9e6a8aff38dfe44c1123c9707a280515f","ref":"refs/heads/master","pushedAt":"2024-03-26T11:24:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Add gene body coverage information to MultiQC","shortMessageHtmlLink":"Add gene body coverage information to MultiQC"}},{"before":"430c5b0b39933ceb9262e038afe98eccbed98c1d","after":"dc2281a3e067153af336c10cf9c0126a72848766","ref":"refs/heads/master","pushedAt":"2024-03-25T12:58:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Prepare release 55.3.0","shortMessageHtmlLink":"Prepare release 55.3.0"}},{"before":"4431dbd3de341d36cbdbd25067059881c67ec416","after":"430c5b0b39933ceb9262e038afe98eccbed98c1d","ref":"refs/heads/master","pushedAt":"2024-03-25T11:11:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Fix handling of large files in ``samtools-depth``","shortMessageHtmlLink":"Fix handling of large files in samtools-depth"}},{"before":"9a763f15b2accb59d536bc17df4a87b43565ca5b","after":"4431dbd3de341d36cbdbd25067059881c67ec416","ref":"refs/heads/master","pushedAt":"2024-03-11T08:32:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Fix handling downsampled STAR inputs in MultiQC","shortMessageHtmlLink":"Fix handling downsampled STAR inputs in MultiQC"}},{"before":"2f6a0001a08737d8b84bfbb9289abead39e586fe","after":"9a763f15b2accb59d536bc17df4a87b43565ca5b","ref":"refs/heads/master","pushedAt":"2024-03-11T06:43:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jkokosar","name":"Janez Kokosar","path":"/jkokosar","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2889622?s=80&v=4"},"commit":{"message":"Add ``samtools-depth-single`` process","shortMessageHtmlLink":"Add samtools-depth-single process"}},{"before":"f47133860457c9b28c3b64e356769cfa737f5880","after":"2f6a0001a08737d8b84bfbb9289abead39e586fe","ref":"refs/heads/master","pushedAt":"2024-03-07T06:31:13.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"gregorjerse","name":"Gregor Jerše","path":"/gregorjerse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4426582?s=80&v=4"},"commit":{"message":"Set the database name and username\n\nin Github Actions.","shortMessageHtmlLink":"Set the database name and username"}},{"before":"ea5d59bb4d4f384650d7e48d2a8fdfc01c6c1684","after":"f47133860457c9b28c3b64e356769cfa737f5880","ref":"refs/heads/master","pushedAt":"2024-03-06T08:17:56.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"gregorjerse","name":"Gregor Jerše","path":"/gregorjerse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4426582?s=80&v=4"},"commit":{"message":"Migrate Jenkinsfile to GHA workflow","shortMessageHtmlLink":"Migrate Jenkinsfile to GHA workflow"}},{"before":"c1cfb052f164739b20f177e9342f28a398547acc","after":"ea5d59bb4d4f384650d7e48d2a8fdfc01c6c1684","ref":"refs/heads/master","pushedAt":"2024-03-04T10:05:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gregorjerse","name":"Gregor Jerše","path":"/gregorjerse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4426582?s=80&v=4"},"commit":{"message":"Add simple github actions workflow","shortMessageHtmlLink":"Add simple github actions workflow"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEc9yjxQA","startCursor":null,"endCursor":null}},"title":"Activity · genialis/resolwe-bio"}