@genome

The McDonnell Genome Institute

Pinned repositories

  1. gms

    The Genome Modeling System installer

    Perl 65 24

  2. bam-readcount

    count DNA sequence reads in BAM files

    Python 99 42

  3. sciclone

    An R package for inferring the subclonal architecture of tumors

    R 60 33

  • MGI's Analysis Workflows and Pipelines managed by the BGA group.

    Common Workflow Language 26 17 MIT 1 issue needs help Updated Sep 20, 2018
  • Supplementary data for scRNA mutation publication

    Updated Sep 20, 2018
  • Core modules used by the GMS

    Perl 31 49 LGPL-3.0 Updated Sep 19, 2018
  • Docker containerization for the CLE

    Perl 9 Updated Sep 19, 2018
  • Repo for cle related software

    wdl 1 Updated Sep 19, 2018
  • Commands and Modules used by the Reference Improvement group.

    Perl 1 Updated Sep 18, 2018
  • Website for Variant Interpretation for Cancer Consortium:

    JavaScript 1 2 MIT Updated Sep 12, 2018
  • a fat pipeline for running WGBS analysis

    Dockerfile 1 Updated Sep 11, 2018
  • Dockerfile Updated Sep 11, 2018
  • CLI to Manage and Store 10X Genomics Objects

    Perl Updated Sep 10, 2018
  • Dockerfile 1 Updated Sep 10, 2018
  • Updated Sep 5, 2018
  • Python Updated Aug 21, 2018
  • Perl Updated Aug 21, 2018
  • Docker container for Samtools

    2 Updated Aug 20, 2018
  • Create JIRA issues when keywords are matched in RSS feeds.

    Python 2 3 Updated Aug 19, 2018
  • Python Updated Aug 16, 2018
  • Dockerfile Updated Aug 15, 2018
  • Rich Transactional Objects for Perl

    Perl 2 11 Updated Aug 14, 2018
  • Dockerfile Updated Aug 10, 2018
  • Dockerfile Updated Aug 8, 2018
  • Perl Updated Aug 8, 2018
  • Shell Updated Aug 8, 2018
  • Dockerfile Updated Aug 8, 2018
  • Dockerfile Updated Aug 8, 2018
  • Dockerfile Updated Aug 8, 2018
  • Dockerfile Updated Aug 8, 2018
  • Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

    C++ 92 62 GPL-3.0 Updated Jul 2, 2018
  • 1 Updated Jun 13, 2018
  • 1 Updated Jun 12, 2018