#genome_nexus_version: 0-unknown-version-SNAPSHOT
#isoform: uniprot
Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Consequence	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	t_ref_count	t_alt_count	n_ref_count	n_alt_count	HGVSc	HGVSp	HGVSp_Short	Transcript_ID	RefSeq	Protein_position	Codons	Exon_Number	gnomAD_AF	gnomAD_AFR_AF	gnomAD_AMR_AF	gnomAD_ASJ_AF	gnomAD_EAS_AF	gnomAD_FIN_AF	gnomAD_NFE_AF	gnomAD_OTH_AF	gnomAD_SAS_AF	FILTER	Polyphen_Prediction	Polyphen_Score	SIFT_Prediction	SIFT_Score	SWISSPROT	n_depth	t_depth	Annotation_Status
TERT	7015	SAGE	GRCh37	5	1294207	1294207	+	frameshift_variant	Frame_Shift_Del	DEL	G	G	-			GENIE-SAGE-1-1	NORMAL	G	G					Unknown	Unknown	Somatic		WXS									ENST00000310581.5:c.794del	p.Pro265ArgfsTer86	p.P265Rfs*86	ENST00000310581	NM_198253.2	265	cCg/cg	2/16										clinicalReported							117	SUCCESS
CDKN2A	1029	SAGE	GRCh37	9	21971120	21971120	+	stop_gained	Nonsense_Mutation	SNP	G	G	A	rs121913388		GENIE-SAGE-1-1	NORMAL	G	G					Unknown	Unknown	Somatic		WXS									ENST00000304494.5:c.238C>T	p.Arg80Ter	p.R80*	ENST00000304494	NM_000077.4	80	Cga/Tga	2/3	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	clinicalReported							27	SUCCESS
FLT3	2322	SAGE	GRCh37	13	28608257	28608259	+	inframe_deletion	In_Frame_Del	DEL	TCA	TCA	-			GENIE-SAGE-1-1	NORMAL	ATCA	ATCA					Unknown	Unknown	Somatic		WXS									ENST00000241453.7:c.1798_1800del	p.Asp600del	p.D600del	ENST00000241453	NM_004119.2	599	taTGAt/tat	14/24										clinicalReported							3331	SUCCESS
CREBBP	1387	SAGE	GRCh37	16	3781477	3781477	+	splice_region_variant,intron_variant	Splice_Region	DEL	G	G	-			GENIE-SAGE-1-1	NORMAL	G	G					Unknown	Unknown	Somatic		WXS									ENST00000262367.5:c.4891-3del		p.X1631_splice	ENST00000262367	NM_004380.2	1631																			118	SUCCESS
TCF3	6929	SAGE	GRCh37	19	1619444	1619445	+	frameshift_variant	Frame_Shift_Del	DEL	CT	CT	-			GENIE-SAGE-1-1	NORMAL	CT	CT					Unknown	Unknown	Somatic		WXS									ENST00000262965.5:c.1196_1197del	p.Glu399GlyfsTer75	p.E399Gfs*75	ENST00000262965	NM_003200.3	399	gAG/g	15/19																	75	SUCCESS
RUNX1	861	SAGE	GRCh37	21	36259253	36259253	+	frameshift_variant	Frame_Shift_Del	DEL	C	C	-			GENIE-SAGE-1-1	NORMAL	C	C					Unknown	Unknown	Somatic		WXS									ENST00000344691.4:c.157del	p.Glu53ArgfsTer42	p.E53Rfs*42	ENST00000344691	NM_001001890.2	53	Gag/ag	1/6																	80	SUCCESS