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| cmake_minimum_required(VERSION 2.8.3) | |
| project(bam-readcount) | |
| if(NOT CMAKE_INSTALL_PREFIX) | |
| set(CMAKE_INSTALL_PREFIX "/usr") | |
| endif() | |
| set(CMAKE_MODULE_PATH | |
| ${CMAKE_SOURCE_DIR}/cmake | |
| ${CMAKE_SOURCE_DIR}/build-common/cmake | |
| ) | |
| include(TestHelper) | |
| include(VersionHelper) | |
| include(ProjectHelper) | |
| include(PreDepends) | |
| PreDependsInit() | |
| #set(EXE_VERSION_SUFFIX ${FULL_VERSION}) | |
| configure_file(version/version.h.in version/version.h @ONLY) | |
| include_directories(${PROJECT_BINARY_DIR}/version) | |
| set(REQUIRED_BOOST_LIBS program_options regex) | |
| include(BuildBoost) | |
| include_directories(${Boost_INCLUDE_DIRS}) | |
| include(BuildSamtools) | |
| include_directories(${Samtools_INCLUDE_DIRS}) | |
| if(${CMAKE_CXX_COMPILER_ID} MATCHES "GNU|Clang") | |
| set(CMAKE_CXX_FLAGS "-Wall -std=c++0x") | |
| endif () | |
| find_package(Threads) | |
| link_libraries(${CMAKE_THREAD_LIBS_INIT}) | |
| # make sure to pick up headers from library dirs | |
| include_directories("src/lib") | |
| # main project | |
| set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BINARY_DIR}/bin) | |
| add_projects(src/lib) | |
| add_projects(src/exe) | |
| ########################################################################### | |
| ## Testing | |
| set(TEST_DATA_DIRECTORY ${CMAKE_SOURCE_DIR}/test-data) | |
| set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BINARY_DIR}/test-bin) | |
| enable_testing(true) | |
| add_projects(test/lib) | |
| # integration testing | |
| add_subdirectory(integration-test) | |
| ########################################################################### | |
| ## Packaging | |
| include(PackageInfo.cmake) |