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Commits on Mar 9, 2017
  1. @jasonwalker80

    Merge pull request #38 from bainscou/patch-1 

    Improve per library documentation
    jasonwalker80 committed on GitHub Mar 9, 2017
    1b9c52c
  2. @bainscou

    Included missing [tab]

    bainscou committed on GitHub Mar 9, 2017
    fc3d5a0
Commits on Mar 8, 2017
  1. @bainscou

    typo

    bainscou committed on GitHub Mar 8, 2017
    2cfbcf1
  2. @bainscou

    Fixed formatting

    bainscou committed on GitHub Mar 8, 2017
    a0afe49
  3. @bainscou

    Improve per library documentation

    bainscou committed on GitHub Mar 8, 2017
    909f953
Commits on Sep 3, 2016
  1. @ernfrid

    fix test data

    ernfrid committed Sep 3, 2016
    dea4199
  2. @ernfrid

    include cmath and use std::abs

    ernfrid committed Sep 3, 2016
    1c2397a
Commits on Aug 10, 2016
  1. @ernfrid

    Merge pull request #31 from sambrightman/master 

    Fix segmentation fault when BAM file does not exist
    ernfrid committed on GitHub Aug 10, 2016
    c75d864
Commits on Aug 5, 2016
  1. @sambrightman

    Fix segmentation fault when BAM file does not exist

    sambrightman committed Aug 5, 2016
    eb51b61
Commits on Jul 14, 2016
  1. @ernfrid

    Clarify avg_pos_as_fraction

    ernfrid committed on GitHub Jul 14, 2016
    0f3b356
Commits on Apr 11, 2016
  1. @ernfrid

    Create LICENSE 

    Closes 28
    ernfrid committed Apr 11, 2016
    5bbd404
Commits on Dec 20, 2015
  1. @ernfrid

    add in tests for IndelQueueEntry

    ernfrid committed Dec 20, 2015
    d9d6ba5
  2. @ernfrid

    flesh out tests for IndelQueue

    ernfrid committed Dec 20, 2015
    9a2ab34
  3. @ernfrid

    stub in tests for indel queue

    ernfrid committed Dec 20, 2015
    1aa7999
Commits on Dec 19, 2015
  1. @ernfrid

    add badges, cause they're fun!

    ernfrid committed Dec 19, 2015
    c46ae7b
Commits on Dec 18, 2015
  1. @ernfrid

    add travis config from diagnose_dups

    ernfrid committed Dec 18, 2015
    febb0e0
  2. @ernfrid

    update testing framework

    ernfrid committed Dec 18, 2015
    0d8ebf4
  3. @ernfrid

    Merge commit '3a9c528c93a44a9df4df6adc140a5bf5047a7ffa' into queue_re… 

    …factor
    ernfrid committed Dec 18, 2015
    0758d29
  4. @ernfrid

    Squashed 'build-common/' changes from d356b1b..6591585 

    6591585 Create README.md
8e34b23 Add MIT License
59dab48 Merge pull request #2 from genome/gtest_compilation
ac50842 fixup botched subtree/cherry-pick of last commit
927c854 add PreDepends cmake module to build common
fa9ec14 Tests cannot find tr1/tuple on Max OS X Adding the compiler flag fixes this on 10.10.3 with Apple LLVM version 6.1.0 (clang-602.0.53)
e2e9336 htslib installs to /usr/local by default. Update path hints.
7cb5e6a rename Findhtslib.cmake to FindHTSlib.cmake
7fa7004 add a module for finding HTSlib libraries
7e5c12e don't append PACKAGE_VERSION_SUFFIX to FULL_VERSION

git-subtree-dir: build-common
git-subtree-split: 6591585af458d508919e55ddcccd5cb4c50e56e9
    ernfrid committed Dec 18, 2015
    3a9c528
  5. @ernfrid

    enable unit tests

    ernfrid committed Dec 18, 2015
    d6ff3dd
Commits on Dec 17, 2015
  1. @ernfrid

    use the queue class

    ernfrid committed Dec 17, 2015
    5e45a56
  2. @ernfrid

    make a queue class for easier testing

    ernfrid committed Dec 17, 2015
    d7db58e
  3. @ernfrid

    simplify entry code

    ernfrid committed Dec 17, 2015
    2df2c0f
  4. @ernfrid

    move IndelQueueEntry to separate file

    ernfrid committed Dec 17, 2015
    6e2d35f
Commits on Jun 17, 2015
  1. @ernfrid

    Merge pull request #23 from genome/predeps 

    add pre-build dependency handling
    ernfrid committed Jun 17, 2015
    b52fcc2
  2. @tabbott

    Merge commit 'e2e9336d662d27d4eaaf8db072d7756e762a5438' into predeps 

    Fetching upstream changes to build-common before pushing back. Git
subtree does not want to rebase.
    tabbott committed Jun 17, 2015
    932a4e9
  3. @ernfrid @tabbott

    update the install documentation to indicate the new minimum version … 

    …of cmake required
    ernfrid committed with tabbott Jun 16, 2015
    e04ac99
  4. @ernfrid @tabbott

    cmake_parse_arguments requires version 2.8.3 or higher.

    ernfrid committed with tabbott Jun 16, 2015
    97f73ab
  5. @tabbott

    use new ExternalDependency_Add feature of build-common 

    This sets up all of the proper dependencies on the 3rd party libs we
build, removing the need to "make deps" before starting a parallel
build.
    tabbott committed Jun 17, 2015
    a719da3
  6. @tabbott

    add PreDepends cmake module to build common 

    the intent is to enable parallel builds without having to "make deps"
first. this is done by hijacking externalproject_add, add_library, and
add_executable with macros that automatically set dependencies on a
dummy "deps"-like target.
    tabbott committed Jun 13, 2015
    efcdb8b
Commits on Jun 13, 2015
  1. @tabbott

    add vim swap files to gitignore

    tabbott committed Jun 13, 2015
    4e4c357
Commits on Jun 12, 2015
  1. @ernfrid

    respect manually set CMAKE_INSTALL_PREFIX. Closes #22

    ernfrid committed Jun 12, 2015
    57f9bf1
Commits on Jun 10, 2015
  1. @ernfrid

    Merge pull request #20 from morgantaschuk/master 

    Updated the bam-readcount command line 'usage' information
    ernfrid committed Jun 10, 2015
    4e3d18d
  2. @morgantaschuk

    Updated the program usage with an example; updated the README to indi… 

    …cate that it prints to standard out.
    morgantaschuk committed Jun 10, 2015
    e1911ce
Commits on May 22, 2015
  1. @ernfrid

    clear out indel queue between positions to prevent double counting

    ernfrid committed May 22, 2015
    4a0b5ec