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With GitHub pull requests each developer will be forking from the genome organization in order to develop their changes. In order to keep your fork up-to-date you'll need to work with both the repo in the genome organization as well as your forked repo; the overall process can be visualized as a cycle (here nnutter is an example GitHub username):

Here are task oriented pages, roughly in the order you'll need them:

1. How do I install 'hub'?
2. How do I fork a repository?
3. How do I make a pull request?
4. How do I review a pull request?
5. How do I know my pull request will be (or has been) reviewed?
6. How do I fix my pull request if it cannot be automatically merged?
7. How do I git checkout a pull request?
8. How do I cleanup my feature branch once it has been merged?
9. How can I customize notifications?