simple static plots of read pairing information
C++ Python XSLT Perl Objective-C
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README.md

pairoscope

pairoscope generates simple static plots of read pairing information. It is useful for viewing putative SV calls from callers that utilize insert size metrics and read pair orientation.

Building pairoscope

Build Dependencies

  • For APT-based systems (Debian, Ubuntu), install the following packages:
sudo apt-get install build-essential git-core cmake zlib1g-dev libncurses-dev doxygen libcairo-dev libfreetype6-dev

Obtain repository

Clone the repository from github:

git clone https://github.com/genome/pairoscope.git

Beginning with version 0.4.1, you can also just download from the github releases page.

Compile the software

pairoscope does not support in-source builds. So create a subdirectory, enter it, build, and run tests:

mkdir pairoscope/build
cd pairoscope/build
cmake ../
make -j

The binary pairoscope can then be found under pairoscope/build/bin. If you have administrative rights, then run sudo make install to install the tool for all users under /usr/bin.