pairoscope generates simple static plots of read pairing information. It is useful for viewing putative SV calls from callers that utilize insert size metrics and read pair orientation.
- For APT-based systems (Debian, Ubuntu), install the following packages:
sudo apt-get install build-essential git-core cmake zlib1g-dev libncurses-dev doxygen libcairo-dev libfreetype6-dev
Clone the repository from github:
git clone https://github.com/genome/pairoscope.git
Beginning with version 0.4.1, you can also just download from the github releases page.
Compile the software
pairoscope does not support in-source builds. So create a subdirectory, enter it, build, and run tests:
mkdir pairoscope/build cd pairoscope/build cmake ../ make -j
pairoscope can then be found under
pairoscope/build/bin. If you have administrative rights, then run
sudo make install to install the tool for all users under