VCF BCOUNT field is incorrect #5

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ernfrid opened this Issue Nov 20, 2014 · 0 comments

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ernfrid commented Nov 20, 2014

See https://www.biostars.org/p/105827/

There are two bugs going on here.

  1. BCOUNT is being limited to only bases seen in called tumor and normal genotypes.
  2. The limitation in 1 is only being applied in a way that non-ACTG bases can count in multiple categories.
@ernfrid ernfrid added the bug label Nov 20, 2014
@ernfrid ernfrid closed this Jul 16, 2015
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