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VCF BCOUNT field is incorrect #5

ernfrid opened this Issue Nov 20, 2014 · 0 comments


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ernfrid commented Nov 20, 2014


There are two bugs going on here.

  1. BCOUNT is being limited to only bases seen in called tumor and normal genotypes.
  2. The limitation in 1 is only being applied in a way that non-ACTG bases can count in multiple categories.

@ernfrid ernfrid added the bug label Nov 20, 2014

@ernfrid ernfrid closed this Jul 16, 2015

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