@acoffman acoffman released this Jul 23, 2014 · 92 commits to master since this release

Assets 2

The latest release of SomaticSniper, The Genome Institute's somatic
SNV calling workhorse, adds an alternative statistical model that
better accounts for the rarity of somatic events by jointly
considering the tumor and normal genotypes. This version also adds
native support for the VCF and BED formats as output. The VCF output
contains information useful for downstream filtering, e. g., fraction
of reads on the forward and reverse strands, average read mapping
quality, and average base quality for reads/bases supporting the
variant allele and those supporting the reference allele.