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README.md

2020-ipcoal

Workshop introduction to coalescent simulations

Notebook outline:

  1. Introduction to toytree + ipcoal
  2. Introduction to the coalescent.
  3. Introduction to the multi-species coalescent.

Presentation:

  1. what is Python, glue.
  2. jupyter and interactive.
  3. Coalescent simulations.
  4. What is the coalescent.
  5. Structured coalescent.
  6. Population demographic models.
  7. Species trees (MSC)
  8. We are going to learn 3 Python libraries:
    • toytree
    • ipcoal
    • ipyrad.analysis
  9. Missing data in RAD-seq...

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Workshop introduction to coalescent simulations

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