Permalink
Cannot retrieve contributors at this time
| version: '2' | |
| services: | |
| biomaj-mongo: | |
| image: mongo | |
| volumes: | |
| - ${BIOMAJ_DIR}/mongo:/data/db | |
| biomaj-redis: | |
| image: redis | |
| volumes: | |
| - ${BIOMAJ_DIR}/redis:/data | |
| biomaj-elasticsearch: | |
| image: "elasticsearch:2" | |
| command: "elasticsearch -Des.cluster.name='biomaj'" | |
| biomaj-rabbitmq: | |
| image: rabbitmq | |
| hostname: biomaj-rabbitmq | |
| command: rabbitmq-server | |
| entrypoint: "" | |
| volumes: | |
| - ${BIOMAJ_DIR}/rabbitmq:/var/lib/rabbitmq | |
| - ${BIOMAJ_DIR}/biomaj-config/rabbitmq.config:/etc/rabbitmq/rabbitmq.config:ro | |
| environment: | |
| - RABBITMQ_DEFAULT_USER=biomaj | |
| - RABBITMQ_DEFAULT_PASS=biomaj | |
| biomaj-consul: | |
| image: consul | |
| hostname: consulnode1 | |
| ports: | |
| - "8400:8400" | |
| - "8500:8500" | |
| - "8600:53" | |
| command: agent -dev -client 0.0.0.0 -log-level info | |
| biomaj-prometheus: | |
| image: prom/prometheus:v1.8.2 | |
| ports: | |
| - "9090:9090" | |
| volumes: | |
| - ${BIOMAJ_DIR}/biomaj-config/prometheus.yml:/etc/prometheus/prometheus.yml | |
| depends_on: | |
| - biomaj-consul | |
| command: | |
| - '-storage.local.retention=720h' | |
| - '-config.file=/etc/prometheus/prometheus.yml' | |
| biomaj-influxdb: | |
| image: influxdb | |
| volumes: | |
| - ${BIOMAJ_DIR}/influxdb:/var/lib/influxdb | |
| environment: | |
| - INFLUXDB_DB=biomaj | |
| - INFLUXDB_USER=biomaj | |
| - INFLUXDB_PASSWORD=biomaj | |
| biomaj-public-proxy: | |
| # In production, port 8080 should not be open | |
| image: traefik:1.7 | |
| ports: | |
| # - "8080:8080" | |
| - "5000:80" | |
| volumes: | |
| - ${BIOMAJ_DIR}/proxy/traefik/traefik.toml:/etc/traefik/traefik.toml | |
| - /var/run/docker.sock:/var/run/docker.sock | |
| depends_on: | |
| - biomaj-consul | |
| biomaj-internal-proxy: | |
| # In production, ports should not be open | |
| image: traefik:1.7 | |
| #ports: | |
| # - "8082:8080" | |
| # - "8081:80" | |
| volumes: | |
| - ${BIOMAJ_DIR}/proxy/traefik/traefik-int.toml:/etc/traefik/traefik.toml | |
| depends_on: | |
| - biomaj-consul | |
| biomaj-user-web: | |
| image: quay.io/osallou/biomaj | |
| build: | |
| context: . | |
| volumes: | |
| - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data | |
| environment: | |
| - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD} | |
| - BIOMAJ_CONFIG=/etc/biomaj/config.yml | |
| - REDIS_PREFIX=biomajuser | |
| - WAIT_HOSTS=biomaj-mongo:27017, biomaj-consul:8500 | |
| depends_on: | |
| - biomaj-mongo | |
| - biomaj-consul | |
| - biomaj-redis | |
| command: ["/startup.sh", "gunicorn", "-b", "0.0.0.0:5000", "--log-config", "/etc/biomaj/production.ini biomaj_user.wsgi:app"] | |
| biomaj-download-web: | |
| image: quay.io/osallou/biomaj | |
| build: | |
| context: . | |
| volumes: | |
| - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data | |
| environment: | |
| - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD} | |
| - BIOMAJ_CONFIG=/etc/biomaj/config.yml | |
| - REDIS_PREFIX=biomajdownload | |
| - WAIT_HOSTS=biomaj-mongo:27017, biomaj-consul:8500 | |
| depends_on: | |
| - biomaj-mongo | |
| - biomaj-consul | |
| - biomaj-redis | |
| command: ["/startup.sh", "gunicorn", "-c", "/etc/biomaj/gunicorn_conf.py", "-b", "0.0.0.0:5000", "--log-config", "/etc/biomaj/production.ini biomaj_download.biomaj_download_web:app"] | |
| biomaj-download-message: | |
| image: quay.io/osallou/biomaj | |
| build: | |
| context: . | |
| volumes: | |
| - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data | |
| environment: | |
| - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD} | |
| - BIOMAJ_CONFIG=/etc/biomaj/config.yml | |
| - REDIS_PREFIX=biomajdownload | |
| - RABBITMQ_USER=biomaj | |
| - RABBITMQ_PASSWORD=biomaj | |
| - WAIT_HOSTS=biomaj-rabbitmq:5672, biomaj-mongo:27017, biomaj-consul:8500 | |
| depends_on: | |
| - biomaj-mongo | |
| - biomaj-consul | |
| - biomaj-rabbitmq | |
| - biomaj-redis | |
| command: ["/startup.sh", "python3", "/root/biomaj-download/bin/biomaj_download_consumer.py"] | |
| biomaj-process-web: | |
| image: quay.io/osallou/biomaj | |
| build: | |
| context: . | |
| volumes: | |
| - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data | |
| - ${BIOMAJ_DIR}/biomaj/process:/opt/conda/envs | |
| environment: | |
| - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD} | |
| - BIOMAJ_CONFIG=/etc/biomaj/config.yml | |
| - REDIS_PREFIX=biomajprocess | |
| - WAIT_HOSTS=biomaj-mongo:27017, biomaj-consul:8500 | |
| depends_on: | |
| - biomaj-mongo | |
| - biomaj-consul | |
| - biomaj-redis | |
| command: ["/startup.sh", "gunicorn", "-c", "/etc/biomaj/gunicorn_conf.py", "-b", "0.0.0.0:5000", "--log-config", "/etc/biomaj/production.ini biomaj_process.biomaj_process_web:app"] | |
| biomaj-process-message: | |
| image: quay.io/osallou/biomaj | |
| build: | |
| context: . | |
| volumes: | |
| - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data | |
| - ${BIOMAJ_DIR}/biomaj/process:/opt/conda/envs | |
| environment: | |
| - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD} | |
| - BIOMAJ_CONFIG=/etc/biomaj/config.yml | |
| - REDIS_PREFIX=biomajprocess | |
| - RABBITMQ_USER=biomaj | |
| - RABBITMQ_PASSWORD=biomaj | |
| - DOCKER_URL=${DOCKER_URL} | |
| - WAIT_HOSTS=biomaj-rabbitmq:5672, biomaj-mongo:27017, biomaj-consul:8500 | |
| depends_on: | |
| - biomaj-mongo | |
| - biomaj-consul | |
| - biomaj-rabbitmq | |
| - biomaj-redis | |
| - biomaj-elasticsearch | |
| command: ["/startup.sh", "python3", "/root/biomaj-process/bin/biomaj_process_consumer.py"] | |
| biomaj-daemon-web: | |
| image: quay.io/osallou/biomaj | |
| build: | |
| context: . | |
| volumes: | |
| - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data | |
| environment: | |
| - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD} | |
| - BIOMAJ_CONFIG=/etc/biomaj/config.yml | |
| - REDIS_PREFIX=biomajdaemon | |
| - RABBITMQ_USER=biomaj | |
| - RABBITMQ_PASSWORD=biomaj | |
| - WAIT_HOSTS=biomaj-redis:6379, biomaj-mongo:27017, biomaj-consul:8500 | |
| depends_on: | |
| - biomaj-mongo | |
| - biomaj-consul | |
| - biomaj-rabbitmq | |
| - biomaj-redis | |
| - biomaj-influxdb | |
| - biomaj-elasticsearch | |
| - biomaj-user-web | |
| - biomaj-download-web | |
| - biomaj-process-web | |
| command: ["/startup.sh", "gunicorn", "-c", "/etc/biomaj/gunicorn_conf.py", "-b", "0.0.0.0:5000", "--log-config", "/etc/biomaj/production.ini biomaj_daemon.daemon.biomaj_daemon_web:app"] | |
| biomaj-daemon-message: | |
| image: quay.io/osallou/biomaj | |
| build: | |
| context: . | |
| volumes: | |
| - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data | |
| environment: | |
| - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD} | |
| - BIOMAJ_CONFIG=/etc/biomaj/config.yml | |
| - REDIS_PREFIX=biomajdaemon | |
| - RABBITMQ_USER=biomaj | |
| - RABBITMQ_PASSWORD=biomaj | |
| - WAIT_HOSTS=biomaj-redis:6379, biomaj-mongo:27017, biomaj-consul:8500, biomaj-rabbitmq:5672 | |
| depends_on: | |
| - biomaj-mongo | |
| - biomaj-consul | |
| - biomaj-rabbitmq | |
| - biomaj-redis | |
| - biomaj-elasticsearch | |
| - biomaj-user-web | |
| - biomaj-download-web | |
| - biomaj-process-web | |
| command: ["/startup.sh", "python3", "/root/biomaj-daemon/bin/biomaj_daemon_consumer.py"] | |
| biomaj-watcher-web: | |
| image: quay.io/osallou/biomaj | |
| build: | |
| context: . | |
| volumes: | |
| - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data | |
| environment: | |
| - BIOMAJ_CONFIG=/etc/biomaj/config.yml | |
| - WAIT_HOSTS=biomaj-redis:6379, biomaj-mongo:27017, biomaj-consul:8500 | |
| depends_on: | |
| - biomaj-mongo | |
| - biomaj-consul | |
| - biomaj-user-web | |
| - biomaj-daemon-web | |
| - biomaj-elasticsearch | |
| command: ["/startup.sh", "/root/watcher.sh"] | |
| biomaj-cron: | |
| image: quay.io/osallou/biomaj-cron | |
| volumes: | |
| - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data | |
| environment: | |
| - BIOMAJ_CONFIG=/etc/biomaj/config.yml | |
| depends_on: | |
| - biomaj-daemon-web | |
| biomaj-ftp: | |
| image: quay.io/osallou/biomaj | |
| build: | |
| context: . | |
| volumes: | |
| - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data | |
| environment: | |
| - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD} | |
| - BIOMAJ_CONFIG=/etc/biomaj/config.yml | |
| - REDIS_PREFIX=biomajftp | |
| - RABBITMQ_USER=biomaj | |
| - RABBITMQ_PASSWORD=biomaj | |
| - MASQUERADE_ADDRESS=${MASQUERADE_ADDRESS} | |
| - WAIT_HOSTS=biomaj-mongo:27017, biomaj-consul:8500 | |
| depends_on: | |
| - biomaj-mongo | |
| - biomaj-consul | |
| - biomaj-user-web | |
| - biomaj-elasticsearch | |
| ports: | |
| - "2121:21" | |
| command: ["/startup.sh", "python3", "/root/biomaj-ftp/bin/biomaj_ftp_service.py"] | |
| biomaj-release-web: | |
| image: quay.io/osallou/biomaj | |
| build: | |
| context: . | |
| volumes: | |
| - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data | |
| environment: | |
| - BIOMAJ_CONFIG=/etc/biomaj/config.yml | |
| - REDIS_PREFIX=biomajrelease | |
| - REDIS_DAEMON_PREFIX=biomajdaemon | |
| - WAIT_HOSTS=biomaj-redis:6379, biomaj-mongo:27017, biomaj-consul:8500 | |
| depends_on: | |
| - biomaj-consul | |
| - biomaj-redis | |
| - biomaj-daemon-web | |
| - biomaj-daemon-message | |
| command: ["/startup.sh", "python3", "/root/biomaj-release/bin/biomaj_release.py"] | |
| biomaj-expose: | |
| image: quay.io/osallou/biomaj-expose | |
| labels: | |
| - traefik.enable=true | |
| - traefik.frontend.rule=PathPrefix:/db | |
| - traefik.frontend.auth.forward.address=http://biomaj-daemon-web:5000/api/daemon/expose | |
| - traefik.frontend.auth.forward.trustForwardHeader=true | |
| depends_on: | |
| - biomaj-internal-proxy | |
| build: | |
| context: proxy/nginx | |
| volumes: | |
| - ${PWD}/proxy/nginx/default.conf:/etc/nginx/conf.d/default.conf:ro | |
| - ${BIOMAJ_DIR}/biomaj/db:/usr/share/nginx/html/db:ro | |
| command: [nginx-debug, '-g', 'daemon off;'] |