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@genpat-it

GENPAT (Italian National Reference Centre for WGS of microbial pathogens)

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  1. spread spread Public

    Project based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of both tree layout and metadata.

    CSS 4

  2. genpat-dashboard genpat-dashboard Public

    GenPat-Dashboard web application

    JavaScript 1

  3. vcf2mst vcf2mst Public

    Hamming Distance based Minimum Spanning Tree from Samples vcf using graptree

    Perl 3

  4. TreeToCongruency TreeToCongruency Public

    Forked from Nicolas-Radomski/TreeToCongruency

    Script comparing two trees through a tanglegram and estimations of congruency metrics

    R

  5. grapetree-gis grapetree-gis Public

    Project based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of both tree layout and metadata.

    JavaScript

  6. CIS CIS Public

Repositories

Showing 10 of 18 repositories
  • spread Public

    Project based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of both tree layout and metadata.

    genpat-it/spread’s past year of commit activity
    CSS 4 GPL-3.0 0 0 0 Updated Jul 4, 2024
  • cohesive Public
    genpat-it/cohesive’s past year of commit activity
    Groovy 0 AGPL-3.0 0 0 0 Updated Jun 13, 2024
  • genpat-it/cohesive-jenkins’s past year of commit activity
    0 AGPL-3.0 1 0 0 Updated May 31, 2024
  • genpat-it/cohesive-ngsmanager’s past year of commit activity
    Nextflow 0 AGPL-3.0 1 0 0 Updated May 31, 2024
  • genpat-it/cohesive-images’s past year of commit activity
    0 0 0 0 Updated May 31, 2024
  • genpat-it/wiki-engine’s past year of commit activity
    Dockerfile 0 GPL-3.0 0 0 0 Updated May 31, 2024
  • MSTreesV2_POC Public

    GrapeTree for large datasets

    genpat-it/MSTreesV2_POC’s past year of commit activity
    Python 0 0 0 0 Updated May 22, 2024
  • vcf2mst Public

    Hamming Distance based Minimum Spanning Tree from Samples vcf using graptree

    genpat-it/vcf2mst’s past year of commit activity
    Perl 0 GPL-3.0 3 1 0 Updated May 15, 2024
  • cgmlst-dists-py Public

    The python multithreaded version of the famous cgmlst-dists bioinformatic tool by Torsten Seemann

    genpat-it/cgmlst-dists-py’s past year of commit activity
    Python 0 0 0 0 Updated Apr 22, 2024
  • ngsmanager Public

    Bioinformatic pipeline of the GENPAT platform

    genpat-it/ngsmanager’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Nov 23, 2023

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