diff --git a/dev-lang/julia/Manifest b/dev-lang/julia/Manifest index 38d3d84115db1..a4f7d66f13f3b 100644 --- a/dev-lang/julia/Manifest +++ b/dev-lang/julia/Manifest @@ -1,4 +1,5 @@ DIST julia-0b211609.patch 9574 BLAKE2B bf43f143b8873ad1812d95d5866a77f28b5dfeb05f41c9dd8f384109ec8cfab09f78bb7b891d5178d6c445ba58cdfe2bdf0cc4c5bf032910c42d4fd1b89883f7 SHA512 aaeeee2e96773589e4347af4df169ef3d241a4c7a22d28ec356a13062f7d11f043cebce8b79afbebb1fb411ad957d4d14880ae051924cb694b39283ccce1658b +DIST julia-1.10.0-full.tar.gz 318571431 BLAKE2B 66de48ba107c183c3d431419d8c7910306b99528bb377ace77e74fb3307cbb0ddea1aad615ade7ec448a8817a646aaee90b86ca24ef78d226bdb8432f2287e41 SHA512 9a062de6873d56a93df557715e95b6c120411095c05b5e3137329519499a7d84ec4757bbac152d9732c442c3cd988919e817c8b96d0a38fa1debee7ff5828fd0 DIST julia-1.8.0-074d761f.patch 2198 BLAKE2B 7d4b147e290defceaad1b5b6d0c2c9a323b47d685bb1865b23c84aa68135c00104e653a5046d276aa540415ee4c95426f1a4538df3ba0ae4c348966a2f2b1742 SHA512 ff1e23746851b1b7a4480df75815abb35ccc8006f622acb5fb3928e20832cf55022c96650590c8dfea9b39185a3284a0d1310dee3f439429c91e00af567b66f1 DIST julia-1.8.0-0db596e6.patch 15029 BLAKE2B 2d5152436c2a7b0dcd60346c9fe9ea008f7672a68ae038762c5952c6c85173d28b3fd7335282e783cc1f91102e8dd58ae9967caa476ad8f93dd60f8f485fbbe3 SHA512 1f4eb42656bbaed3c85d520875c687f0dd98e9ef0d73f0d3a2b3ac4395020984effc03477c56ab6594cd15e87899923591f6cabeb4e2a43c26725ebe51dbf0be DIST julia-1.8.0-190565c2.patch 4166 BLAKE2B f55937098219f2d34044cf8963b5421912c2eeeec0e38f8f2c6a0146412f6c653a9797cc1695a514dff31a628d904f68a2750fd0fd63057f5dd34210ae845e92 SHA512 a1b26fb0e36767e42268e9cf97ff4b8bc792e8c4c00196b335dede91d814c381a34711e8759b175c0fd66dd88e91edef7b467be16854267c66bf653bb361df3a diff --git a/dev-lang/julia/files/julia-1.10.0-cuda.patch b/dev-lang/julia/files/julia-1.10.0-cuda.patch new file mode 100644 index 0000000000000..d77b287151fb0 --- /dev/null +++ b/dev-lang/julia/files/julia-1.10.0-cuda.patch @@ -0,0 +1,30 @@ +diff --git a/Makefile b/Makefile +index 1565014..5e9b4cc 100644 +--- a/Makefile ++++ b/Makefile +@@ -196,7 +196,7 @@ else ifeq ($(JULIA_BUILD_MODE),debug) + JL_PRIVATE_LIBS-0 += libjulia-internal-debug libjulia-codegen-debug + endif + ifeq ($(USE_GPL_LIBS), 1) +-JL_PRIVATE_LIBS-$(USE_SYSTEM_LIBSUITESPARSE) += libamd libbtf libcamd libccolamd libcholmod libcholmod_cuda libcolamd libklu libldl librbio libspqr libspqr_cuda libsuitesparseconfig libumfpack ++JL_PRIVATE_LIBS-$(USE_SYSTEM_LIBSUITESPARSE) += libamd libbtf libcamd libccolamd libcholmod libcolamd libklu libldl librbio libspqr libsuitesparseconfig libumfpack + endif + JL_PRIVATE_LIBS-$(USE_SYSTEM_LIBBLASTRAMPOLINE) += libblastrampoline + JL_PRIVATE_LIBS-$(USE_SYSTEM_PCRE) += libpcre2-8 + +diff --git a/base/Makefile b/base/Makefile +index ad2bb6a..493302a 100644 +--- a/base/Makefile ++++ b/base/Makefile +@@ -269,11 +269,9 @@ $(eval $(call symlink_system_library,LIBSUITESPARSE,libamd)) + $(eval $(call symlink_system_library,LIBSUITESPARSE,libcamd)) + $(eval $(call symlink_system_library,LIBSUITESPARSE,libccolamd)) + $(eval $(call symlink_system_library,LIBSUITESPARSE,libcholmod)) +-$(eval $(call symlink_system_library,LIBSUITESPARSE,libcholmod_cuda)) + $(eval $(call symlink_system_library,LIBSUITESPARSE,libcolamd)) + $(eval $(call symlink_system_library,LIBSUITESPARSE,libumfpack)) + $(eval $(call symlink_system_library,LIBSUITESPARSE,libspqr)) +-$(eval $(call symlink_system_library,LIBSUITESPARSE,libspqr_cuda)) + $(eval $(call symlink_system_library,LIBSUITESPARSE,libsuitesparseconfig)) + # EXCLUDED LIBRARIES (installed/used, but not vendored for use with dlopen): + # libunwind diff --git a/dev-lang/julia/files/julia-1.10.0-lib.patch b/dev-lang/julia/files/julia-1.10.0-lib.patch new file mode 100644 index 0000000000000..0c5f5e7ea2d91 --- /dev/null +++ b/dev-lang/julia/files/julia-1.10.0-lib.patch @@ -0,0 +1,35 @@ +diff --git a/stdlib/SuiteSparse_jll/src/SuiteSparse_jll.jl b/stdlib/SuiteSparse_jll/src/SuiteSparse_jll.jl +index f245759..e5a4502 100644 +--- a/stdlib/SuiteSparse_jll/src/SuiteSparse_jll.jl ++++ b/stdlib/SuiteSparse_jll/src/SuiteSparse_jll.jl +@@ -67,18 +67,18 @@ elseif Sys.isapple() + const libsuitesparseconfig = "@rpath/libsuitesparseconfig.7.dylib" + const libumfpack = "@rpath/libumfpack.6.dylib" + else +- const libamd = "libamd.so.3" +- const libbtf = "libbtf.so.2" +- const libcamd = "libcamd.so.3" +- const libccolamd = "libccolamd.so.3" +- const libcholmod = "libcholmod.so.4" +- const libcolamd = "libcolamd.so.3" +- const libklu = "libklu.so.2" +- const libldl = "libldl.so.3" +- const librbio = "librbio.so.4" +- const libspqr = "libspqr.so.4" +- const libsuitesparseconfig = "libsuitesparseconfig.so.7" +- const libumfpack = "libumfpack.so.6" ++ const libamd = "libamd.so" ++ const libbtf = "libbtf.so" ++ const libcamd = "libcamd.so" ++ const libccolamd = "libccolamd.so" ++ const libcholmod = "libcholmod.so" ++ const libcolamd = "libcolamd.so" ++ const libklu = "libklu.so" ++ const libldl = "libldl.so" ++ const librbio = "librbio.so" ++ const libspqr = "libspqr.so" ++ const libsuitesparseconfig = "libsuitesparseconfig.so" ++ const libumfpack = "libumfpack.so" + end + + function __init__() diff --git a/dev-lang/julia/files/julia-1.10.0-libgit2.patch b/dev-lang/julia/files/julia-1.10.0-libgit2.patch new file mode 100644 index 0000000000000..d15008bfe9178 --- /dev/null +++ b/dev-lang/julia/files/julia-1.10.0-libgit2.patch @@ -0,0 +1,13 @@ +diff --git a/stdlib/LibGit2_jll/src/LibGit2_jll.jl b/stdlib/LibGit2_jll/src/LibGit2_jll.jl +index f8e814f..622a0c1 100644 +--- a/stdlib/LibGit2_jll/src/LibGit2_jll.jl ++++ b/stdlib/LibGit2_jll/src/LibGit2_jll.jl +@@ -23,7 +23,7 @@ if Sys.iswindows() + elseif Sys.isapple() + const libgit2 = "@rpath/libgit2.1.6.dylib" + else +- const libgit2 = "libgit2.so.1.6" ++ const libgit2 = "libgit2.so" + end + + function __init__() diff --git a/dev-lang/julia/julia-1.10.0.ebuild b/dev-lang/julia/julia-1.10.0.ebuild new file mode 100644 index 0000000000000..a68304b1beca4 --- /dev/null +++ b/dev-lang/julia/julia-1.10.0.ebuild @@ -0,0 +1,203 @@ + +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +# correct versions for stdlibs are in deps/checksums +# for everything else, run with network-sandbox and wait for the crash + +EAPI=8 + +MY_LLVM_V=15.0.7 + +PYTHON_COMPAT=( python3_{9..12} ) + +inherit check-reqs flag-o-matic optfeature pax-utils python-any-r1 toolchain-funcs + +DESCRIPTION="High-performance programming language for technical computing" +HOMEPAGE="https://julialang.org/ + https://github.com/JuliaLang/julia/" +SRC_URI=" + https://github.com/JuliaLang/julia/releases/download/v${PV}/${P}-full.tar.gz +" + +LICENSE="MIT" +SLOT="0" +PROPERTIES="test_network" +RESTRICT="test" + +RDEPEND=" + >=dev-libs/libutf8proc-2.6.1:0=[-cjk] + >=dev-util/patchelf-0.13 + >=net-libs/mbedtls-2.2 + >=sci-mathematics/dsfmt-2.2.4 + >=sys-libs/libunwind-1.1:0= + >=virtual/blas-3.6 + app-arch/p7zip + app-misc/ca-certificates + dev-libs/gmp:0= + dev-libs/libgit2:0 + dev-libs/mpfr:0= + net-misc/curl[http2,ssh] + sci-libs/amd:0= + sci-libs/arpack:0= + sci-libs/btf:0= + sci-libs/camd:0= + sci-libs/ccolamd:0= + sci-libs/cholmod:0= + sci-libs/colamd:0= + sci-libs/fftw:3.0=[threads] + sci-libs/klu:0= + sci-libs/ldl:0= + sci-libs/openlibm:0= + sci-libs/openblas:0= + sci-libs/spqr:0= + sci-libs/suitesparseconfig:0= + sci-libs/umfpack:0= + sys-libs/zlib:0= + virtual/lapack +" +DEPEND="${RDEPEND}" +BDEPEND=" + ${PYTHON_DEPS} + dev-util/cmake + virtual/pkgconfig +" + +CHECKREQS_DISK_BUILD="4G" +PATCHES=( + "${FILESDIR}"/julia-1.10.0-cuda.patch + "${FILESDIR}"/julia-1.10.0-libgit2.patch + "${FILESDIR}"/julia-1.10.0-lib.patch + "${FILESDIR}"/julia-1.9.4-string-replace.patch + ) +QA_FLAGS_IGNORED+='usr/.*/julia/sys.so' # Julia sysimage generated by bootstrapping. + +pkg_setup() { + check-reqs_pkg_setup + python-any-r1_pkg_setup +} + +src_unpack() { + local -a tounpack=( ${A} ) + # the main source tree, followed by deps + unpack "${tounpack[0]}" + + mkdir -p "${S}/deps/srccache/" + local i + for i in "${tounpack[@]:1}"; do + cp "${DISTDIR}/${i}" "${S}/deps/srccache/${i#julia-}" || die + done + + # Extract tarballs for patching. + # cd "${S}/deps/srccache/" || die + # tar xf llvm-julia-${MY_LLVM_V}-3.tar.gz || die +} + +src_prepare() { + default + + # Sledgehammer: + # - prevent fetching of bundled stuff in compile and install phase + # - respect CFLAGS + # - respect EPREFIX and Gentoo specific paths + + sed -i \ + -e "\|SHIPFLAGS :=|c\\SHIPFLAGS := ${CFLAGS}" \ + Make.inc || die + + sed -i \ + -e "s|ar -rcs|$(tc-getAR) -rcs|g" \ + src/Makefile || die + + # Blank the tarball checksum check script. + echo "#!/bin/sh" > deps/tools/jlchecksum || die +} + +src_configure() { + # bug #855602 + filter-lto + + # julia does not play well with the system versions of libuv + # Fails to compile with libpcre2 on split-usr, bug #893336 + # USE_SYSTEM_LIBM=0 implies using external openlibm + # Rbio is not available for Gentoo so we usie libsuiteparse locally + cat <<-EOF > Make.user + LOCALBASE:=${EPREFIX}/usr + override prefix:=${EPREFIX}/usr + override libdir:=\$(prefix)/$(get_libdir) + override CC:=$(tc-getCC) + override CXX:=$(tc-getCXX) + override AR:=$(tc-getAR) + + BUNDLE_DEBUG_LIBS:=0 + USE_BINARYBUILDER:=0 + USE_INTEL_JITEVENTS=0 + USE_SYSTEM_CSL:=1 + USE_SYSTEM_LLVM:=0 + USE_SYSTEM_LIBUNWIND:=1 + USE_SYSTEM_PCRE:=0 + USE_SYSTEM_LIBM:=0 + USE_SYSTEM_OPENLIBM:=1 + USE_SYSTEM_DSFMT:=1 + USE_SYSTEM_BLAS:=1 + USE_SYSTEM_LAPACK:=1 + USE_SYSTEM_LIBBLASTRAMPOLINE:=0 + USE_SYSTEM_GMP:=1 + USE_SYSTEM_MPFR:=1 + USE_SYSTEM_LIBSUITESPARSE:=0 + USE_SYSTEM_LIBUV:=0 + USE_SYSTEM_UTF8PROC:=1 + USE_SYSTEM_MBEDTLS:=1 + USE_SYSTEM_LIBSSH2:=1 + USE_SYSTEM_NGHTTP2:=1 + USE_SYSTEM_CURL:=1 + USE_SYSTEM_LIBGIT2:=1 + USE_SYSTEM_PATCHELF:=1 + USE_SYSTEM_ZLIB:=1 + USE_SYSTEM_P7ZIP:=1 + VERBOSE:=1 + EOF +} + +src_compile() { + # Julia accesses /proc/self/mem on Linux. + addpredict /proc/self/mem + + # Julia expects .so files to be in lib64 during compilation + mkdir -p "${S}"/usr/lib + ln -s lib "${S}"/usr/lib64 + + emake + pax-mark m "$(file usr/bin/julia-* | awk -F : '/ELF/ {print $1}')" +} + +src_install() { + emake -j1 install DESTDIR="${D}" + dodoc CONTRIBUTING.md HISTORY.md NEWS.md README.md THIRDPARTY.md + + local llvmslot=$(ver_cut 1 ${MY_LLVM_V}) + cp "${S}"/usr/lib/libLLVM-${llvmslot}jl.so "${ED}"/usr/$(get_libdir)/julia/ || die + cp "${S}"/usr/lib/libLLVM-${MY_LLVM_V}jl.so "${ED}"/usr/$(get_libdir)/julia/ || die + + mv "${ED}"/usr/etc/julia "${ED}"/etc || die + rmdir "${ED}"/usr/etc || die + mv "${ED}"/usr/share/doc/julia/html "${ED}"/usr/share/doc/"${PF}" || die + rmdir "${ED}"/usr/share/doc/julia || die + + # The appdata directory is deprecated. + mv "${ED}"/usr/share/{appdata,metainfo}/ || die + + # Link ca-certificates.crt, bug: https://bugs.gentoo.org/888978 + dosym -r /etc/ssl/certs/ca-certificates.crt /usr/share/julia/cert.pem + + # Julia always searches for "sys.so" inside "/usr/lib/julia", + # bug: https://github.com/JuliaLang/julia/issues/49574 + if [[ $(get_libdir) == "lib64" ]] ; then + insinto /usr/lib/julia + doins "${ED}"/usr/$(get_libdir)/julia/sys.so + fi +} + +pkg_postinst() { + optfeature "Julia Plots" sci-visualization/gr +}