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Osh (Object SHell) is a command-line and API toolkit combining cluster access, database access, and data slicing and dicing. Sort of like awk and cssh morsels wrapped up in a Python crust.
Spatial join, written in Java.
An ordered key/value stored, written in Java.
Spatial index, written in C++
Erdo adapter for Geophile
SpaceSuit is a utility for implementing fast spatial queries on top of SQL database systems that don't have such a capability.