DBL-alpha tags are short regions of the var gene and found within the first DBL domain of the molecule. The tags are characterised by degenerate motifs at the N and C-terminus. this tool extracts DBLa tag regions from larger sequences or contigs.
require 'bio-dbla-finder' file_path = "path_to/myfasta_file.fastq" #create a finder class in this case named robot robot = Finder.new(file_path) #call the find_tags method to list the tags to the stderr robot.find_tags
Copyright (c) 2011 George Githinji. See LICENSE.txt for further details.