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Wrapper of sambamba for Ruby programming language

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README.md

bio-sambamba

Build Status

Full description goes here

Note: this software is under active development!

Installation

    rake build
    rake install

In order to use the gem, you also need sambamba tool installed. For that, do the following:

  • install DMD compiler
  • install Ragel finite state machine compiler

  • On Mac OS X you can install homebrew package manager, then install dmd and ragel easily with

    brew install dmd
    brew install ragel
  • clone sambamba repository and compile the tool
    git clone https://github.com/lomereiter/sambamba.git
    cd sambamba/CLItools/
    make
  • place the executable file build/sambamba to somewhere in your $PATH, for example:
    cp build/sambamba /usr/local/bin

Usage

    require 'bio-sambamba'

The API doc is online. For more code examples see the test files in the source tree.

Project home page

Information on the source tree, documentation, examples, issues and how to contribute, see

http://github.com/lomereiter/bioruby-sambamba

The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.

Cite

If you use this software, please cite one of

Biogems.info

This Biogem is published at #bio-sambamba

Copyright

Copyright (c) 2012 Artem Tarasov. See LICENSE.txt for further details.

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