analysis and plotting code for "Admixture into and within Africa" by George Busby et al 2016 (in review)
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data
figures
packages_dev
packages_ext
plotting_scripts
README.md

README.md

Admixture into and within Sub-Saharan Africa

Summary

This code relates to analyses and figures generated for our paper, Admixture into and within sub-Saharan Africa published in eLife, which can be downloaded here

I've put various pieces of code in this repository, mostly to do with work on admixture in the pan-African dataset used in the paper above. I haven't provided much help on usage, I'm afraid, although the plotting code is reasonably straightforward. It is highly likely that there are bugs, so let me know if you're interested in using anything and you run into problems

Overview of file system

data/

various files containing the baseline data used for plotting

figures/

contains figures generated from plotting_scripts

packages_dev/

a directory of package(s) where I have started to store useful functions (mostly for plotting)

packages_ext/

external libraries that I use, for example, Dan Lawson's library for editing fineSTRUCTURE output

plotting_scripts/

code to make plots for what will be final paper figures