Overview's graph area does not redraw edges automatically #513

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neuma opened this Issue Jan 19, 2012 · 3 comments

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neuma commented Jan 19, 2012

Gephi 0.8 beta on Win7 64bit

When generating a dynamic graph example, the edges contain a dynamic weight attribute. Using the timeline slider, the graph gets updated and the thickness of each edge changes according to its current weight. That's cool.

However, I created a gexf file, containing a dynamic weight attribute. Using again the timeline's slider, it does not update the graph's area automagically. I need to tick one of the other buttons, e.g. "Show Hulls" to get the graph updated. The graph shows up correctly though, but the auto-redrawing is missing. What's the trick?

Update: The labels, e.g. the dynamic weight, is updated automatically.

I added an example file just in case I missed something.

<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<gexf xsi:schemaLocation="http://www.matsim.org/files/dtd http://www.gexf.net/1.2draft/gexf.xsd" xmlns:ns2="http://www.gexf.net/1.2draft/viz" xmlns="http://www.gexf.net/1.2draft" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
    <graph timeformat="double" defaultedgetype="directed" idtype="string" mode="dynamic">
        <attributes class="edge" mode="dynamic">
            <attribute id="weight" title="Count" type="float"/>
        </attributes>
        <nodes>
            <node id="11">
                <position x="1000.0" y="1000.0" z="0.0"/>
            </node>
            <node id="12">
                <position x="1000.0" y="2000.0" z="0.0"/>
            </node>
            <node id="21">
                <position x="2000.0" y="1000.0" z="0.0"/>
            </node>
            <node id="22">
                <position x="2000.0" y="2000.0" z="0.0"/>
            </node>
        </nodes>
        <edges>
            <edge id="1112" label="network link" source="11" target="12" weight="1.0">
                <attvalues>
                    <attvalue for="weight" value="116" start="0.0"/>
                    <attvalue for="weight" value="1" start="10.0"/>
                    <attvalue for="weight" value="1" start="20.0"/>
                    <attvalue for="weight" value="1" start="30.0"/>
                    <attvalue for="weight" value="1" start="40.0"/>
                    <attvalue for="weight" value="1" start="50.0"/>
                    <attvalue for="weight" value="1" start="60.0"/>
                    <attvalue for="weight" value="1" start="70.0"/>
                    <attvalue for="weight" value="1" start="80.0"/>
                    <attvalue for="weight" value="69" start="100.0"/>
                </attvalues>
            </edge>
            <edge id="1121" label="network link" source="11" target="21" weight="1.0">
                <attvalues>
                    <attvalue for="weight" value="151" start="0.0"/>
                    <attvalue for="weight" value="862" start="10.0"/>
                    <attvalue for="weight" value="652" start="20.0"/>
                    <attvalue for="weight" value="302" start="30.0"/>
                    <attvalue for="weight" value="269" start="40.0"/>
                    <attvalue for="weight" value="250" start="50.0"/>
                    <attvalue for="weight" value="119" start="60.0"/>
                    <attvalue for="weight" value="201" start="70.0"/>
                    <attvalue for="weight" value="1008" start="80.0"/>
                    <attvalue for="weight" value="1274" start="100.0"/>
                </attvalues>
            </edge>
            <edge id="1211" label="network link" source="12" target="11" weight="1.0">
                <attvalues>
                    <attvalue for="weight" value="1" start="0.0"/>
                    <attvalue for="weight" value="1" start="10.0"/>
                    <attvalue for="weight" value="1" start="20.0"/>
                    <attvalue for="weight" value="1" start="30.0"/>
                    <attvalue for="weight" value="1" start="40.0"/>
                    <attvalue for="weight" value="1" start="50.0"/>
                    <attvalue for="weight" value="1" start="60.0"/>
                    <attvalue for="weight" value="1" start="70.0"/>
                    <attvalue for="weight" value="1" start="80.0"/>
                    <attvalue for="weight" value="69" start="100.0"/>
                </attvalues>
            </edge>
            <edge id="2212" label="network link" source="22" target="12" weight="1.0">
                <attvalues>
                    <attvalue for="weight" value="1" start="0.0"/>
                    <attvalue for="weight" value="1" start="10.0"/>
                    <attvalue for="weight" value="1" start="20.0"/>
                    <attvalue for="weight" value="1" start="30.0"/>
                    <attvalue for="weight" value="215" start="40.0"/>
                    <attvalue for="weight" value="1" start="50.0"/>
                    <attvalue for="weight" value="1" start="60.0"/>
                    <attvalue for="weight" value="1" start="70.0"/>
                    <attvalue for="weight" value="1" start="80.0"/>
                    <attvalue for="weight" value="1" start="100.0"/>
                </attvalues>
            </edge>
            <edge id="2221" label="network link" source="22" target="21" weight="1.0">
                <attvalues>
                    <attvalue for="weight" value="1" start="0.0"/>
                    <attvalue for="weight" value="560" start="10.0"/>
                    <attvalue for="weight" value="503" start="20.0"/>
                    <attvalue for="weight" value="153" start="30.0"/>
                    <attvalue for="weight" value="366" start="40.0"/>
                    <attvalue for="weight" value="116" start="50.0"/>
                    <attvalue for="weight" value="116" start="60.0"/>
                    <attvalue for="weight" value="151" start="70.0"/>
                    <attvalue for="weight" value="374" start="80.0"/>
                    <attvalue for="weight" value="1" start="100.0"/>
                </attvalues>
            </edge>
        </edges>
    </graph>
</gexf>

and the log...


Log Session: Thursday, January 19, 2012 3:21:28 PM CET
System Info:
Product Version = Gephi 0.8 beta
Operating System = Windows 7 version 6.1 running on x86
Java; VM; Vendor = 1.6.0_18; Java HotSpot(TM) Server VM 16.0-b13; Sun Microsystems Inc.
Runtime = Java(TM) SE Runtime Environment 1.6.0_18-b07
Java Home = C:\Program Files (x86)\Java\jdk1.6.0_18\jre
System Locale; Encoding = de_DE (gephi); Cp1252
Home Directory = C:\Users\user
Current Directory = C:\Program Files (x86)\Gephi
User Directory = C:\Users\user\AppData\Roaming.gephi\dev
Installation = C:\Program Files (x86)\Gephi\gephi
C:\Program Files (x86)\Gephi\platform
Boot & Ext. Classpath = C:\Program Files (x86)\Java\jdk1.6.0_18\jre\lib\resources.jar;C:\Program Files (x86)\Java\jdk1.6.0_18\jre\lib\rt.jar;C:\Program Files (x86)\Java\jdk1.6.0_18\jre\lib\sunrsasign.jar;C:\Program Files (x86)\Java\jdk1.6.0_18\jre\lib\jsse.jar;C:\Program Files (x86)\Java\jdk1.6.0_18\jre\lib\jce.jar;C:\Program Files (x86)\Java\jdk1.6.0_18\jre\lib\charsets.jar;C:\Program Files (x86)\Java\jdk1.6.0_18\jre\classes;C:\Program Files (x86)\Java\jdk1.6.0_18\jre\lib\ext\dnsns.jar;C:\Program Files (x86)\Java\jdk1.6.0_18\jre\lib\ext\localedata.jar;C:\Program Files (x86)\Java\jdk1.6.0_18\jre\lib\ext\sunjce_provider.jar;C:\Program Files (x86)\Java\jdk1.6.0_18\jre\lib\ext\sunmscapi.jar;C:\Program Files (x86)\Java\jdk1.6.0_18\jre\lib\ext\sunpkcs11.jar
Application Classpath = C:\Program Files (x86)\Gephi\platform\lib\boot.jar;C:\Program Files (x86)\Gephi\platform\lib\org-openide-modules.jar;C:\Program Files (x86)\Gephi\platform\lib\org-openide-util-lookup.jar;C:\Program Files (x86)\Gephi\platform\lib\org-openide-util.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_ar_SA.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_ca.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_cs.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_de.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_es.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_fr.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_gl_ES.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_in_ID.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_it.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_ja.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_ko.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_nl_NL.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_pl.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_pt_BR.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_pt_PT.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_ro.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_ru.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_sq.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_sv.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_tr.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_zh_CN.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\boot_zh_TW.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_ar_SA.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_ca.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_cs.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_de.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_es.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_fr.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_gl_ES.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_in_ID.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_it.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_ja.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_ko.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_nl_NL.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_pl.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_pt_BR.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_pt_PT.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_ro.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_ru.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_sq.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_sv.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_tr.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_zh_CN.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-modules_zh_TW.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_ca.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_cs.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_de.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_es.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_fr.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_gl_ES.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_in_ID.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_it.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_ja.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_ko.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_nl_NL.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_pl.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_pt_BR.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_ro.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_ru.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_sv.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_tr.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util-lookup_zh_CN.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_ar_SA.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_ca.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_cs.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_de.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_es.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_fr.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_gl_ES.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_in_ID.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_it.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_ja.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_ko.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_nl_NL.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_pl.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_pt_BR.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_pt_PT.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_ro.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_ru.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_sq.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_sv.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_tr.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_zh_CN.jar;C:\Program Files (x86)\Gephi\platform\lib\locale\org-openide-util_zh_TW.jar;C:\Program Files (x86)\Java\jdk1.6.0_18\lib\dt.jar;C:\Program Files (x86)\Java\jdk1.6.0_18\lib\tools.jar

Startup Classpath = C:\Program Files (x86)\Gephi\platform\core\core.jar;C:\Program Files (x86)\Gephi\platform\core\org-openide-filesystems.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_ar_SA.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_ca.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_cs.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_de.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_es.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_fr.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_gl_ES.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_in_ID.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_it.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_ja.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_ko.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_nl_NL.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_pl.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_pt_BR.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_pt_PT.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_ro.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_ru.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_sq.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_sv.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_tr.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_zh_CN.jar;C:\Program Files (x86)\Gephi\platform\core\locale\core_zh_TW.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_ar_SA.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_ca.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_cs.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_de.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_es.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_fr.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_gl_ES.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_in_ID.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_it.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_ja.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_ko.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_nl_NL.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_pl.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_pt_BR.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_pt_PT.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_ro.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_ru.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_sq.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_sv.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_tr.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_zh_CN.jar;C:\Program Files (x86)\Gephi\platform\core\locale\org-openide-filesystems_zh_TW.jar;C:\Program Files (x86)\Gephi\gephi\core\locale\core_gephi.jar

WARNING [org.netbeans.core.modules]: the modules [org.gephi.desktop.preview, org.gephi.ui.exporter.plugin, org.gephi.ui.filters.plugin, org.gephi.ui.statistics.plugin] use org.jdesktop.layout which is deprecated: Use javax.swing.GroupLayout instead. (In form editor: select Form ... in Inspector; change Layout Generation Style to Standard Java 6 code.)
Loading native libraries
INFO [org.netbeans.core.startup.NbEvents]: Turning on modules:
org.openide.util.lookup [8.8.1 201107282000]
org.openide.util [8.15.1 201107282000]
org.openide.modules [7.23.1 201107282000]
org.openide.filesystems [7.47.1 201107282000]
org.openide.awt [7.31.2 201109141524]
org.netbeans.api.progress/1 [1.24.1 201107282000]
org.openide.dialogs [7.20.1 201107282000]
org.openide.nodes [7.21.1 201107282000]
org.openide.windows [6.40.1 201107282000]
org.netbeans.modules.editor.mimelookup/1 [1.22.1 201107282000]
org.openide.text [6.37.1 201107282000]
org.netbeans.swing.tabcontrol [1.25.1 201107282000]
org.netbeans.swing.outline [1.14.1 201107282000]
org.openide.explorer [6.35.1 201107282000]
org.openide.actions [6.22.1 201107282000]
org.netbeans.modules.queries/1 [1.23.1 201107282000]
org.openide.loaders [7.21.1 201107282000]
org.openide.io [1.27.1 201107282000]
org.netbeans.swing.plaf [1.20.2 201108310202]
org.netbeans.swing.dirchooser [1.1 111004]
org.netbeans.api.annotations.common/1 [1.9.1 201107282000]
org.netbeans.spi.quicksearch [1.10.1 201107282000]
org.netbeans.bootstrap/1 [2.40.1 201107282000]
org.netbeans.core.startup/1 [1.31.1 201107282000]
org.netbeans.modules.settings/1 [1.31.1 201107282000]
org.netbeans.modules.sendopts/2 [2.13.1 201107282000]
org.netbeans.modules.progress.ui [1.16.1 201107282000]
org.netbeans.modules.print [7.9.1 201107282000]
org.netbeans.modules.keyring [1.6.1 201107282000]
org.netbeans.core/2 [3.25.2 201108310202]
org.netbeans.modules.options.api/1 [1.22.1 201107282000]
org.netbeans.modules.options.keymap [1.14.1 201107282000]
org.netbeans.libs.jna/1 [1.14.1 201107282000]
org.netbeans.modules.masterfs/2 [2.32.2 201108310202]
org.netbeans.modules.keyring.impl [1.3.2 201108310202]
org.netbeans.modules.favorites/1 [1.25.1 201107282000]
org.netbeans.modules.editor.mimelookup.impl/1 [1.14.1 201107282000]
org.netbeans.modules.autoupdate.services [1.26.1 201107282000]
org.netbeans.modules.autoupdate.ui [1.23.1 201107282000]
org.netbeans.libs.junit4 [1.13 201104080000]
org.netbeans.core.windows/2 [2.28.1 201107282000]
org.netbeans.core.ui/1 [1.27.1 201107282000]
org.netbeans.core.nativeaccess/1 [1.12.1 201107282000]
org.netbeans.core.io.ui/1 [1.12.1 201107282000]
org.joda.time [1.0 111004]
org.jfree [1.0 111004]
org.jdesktop.swingx [1.6.1 111004]
org.jdesktop.layout/1 [1.17.1 201107282000]
org.gephi.utils.longtask [0.8.0.2 111004]
org.gephi.project.api [0.8.0.2 111231]
org.gephi.graph.api [0.8.0.3 111231]
org.gephi.data.attributes.api [0.8.0.4 111231]
org.gephi.lib.javacsv [2.0 111004]
org.gephi.dynamic.api [0.8.0.3 111231]
org.gephi.utils [0.8 111004]
org.gephi.datalab.api [0.8.0.8 111231]
org.gephi.visualization.api [0.8.0.1 111004]
org.gephi.tools.api [0.8.0.1 111004]
org.gephi.lib.validation [0.4 111004]
org.gephi.ui.utils [0.8 111004]
org.gephi.lib.gleem [1.0 111004]
org.gephi.lib.jogl [1.1.0.2 111004]
org.gephi.utils.collection [0.8.0.1 111004]
org.gephi.lib.flamingo [5.0.1 111004]
org.gephi.lib.commons.codec [1.4 111004]
org.gephi.ui.components [0.8.0.4 111231]
org.gephi.lib.commonscompress [1.1 111004]
org.gephi.io.database.drivers [0.8.0.2 111231]
org.gephi.io.importer.api [0.8.0.2 111004]
org.gephi.desktop.mrufiles.api [0.8 111004]
org.gephi.desktop.project [0.8.0.1 111004]
org.gephi.visualization [0.8.0.6 120101]
org.gephi.ui.workspace [0.8.1.0 111004]
org.gephi.statistics.api [0.8.1.1 111004]
org.gephi.statistics.plugin [0.8.0.4 111231]
org.gephi.ui.statistics.plugin [0.8.0.3 111004]
org.gephi.lib.jcalendar [1.0 111004]
org.gephi.lib.javamail [1.0 111004]
org.gephi.io.spigot.plugin [0.8.0.1 111231]
org.gephi.ui.spigot.plugin [0.8 111004]
org.gephi.ranking.api [0.8.1.2 111231]
org.gephi.ranking.plugin [0.8.1.1 111004]
org.gephi.ui.ranking.plugin [0.8.1.1 111004]
org.gephi.ui.propertyeditor [0.8.1 111231]
org.gephi.ui.project [0.8 111004]
org.gephi.lib.beansbinding [1.2.1 111004]
org.gephi.io.processor.plugin [0.8 111004]
org.gephi.ui.processor.plugin [0.8 111004]
org.gephi.partition.api [0.8 111004]
org.gephi.partition.plugin [0.8 111004]
org.gephi.ui.partition.plugin [0.8 111004]
org.gephi.io.importer.plugin [0.8.0.5 111004]
org.gephi.ui.importer.plugin [0.8.0.2 111004]
org.gephi.io.generator.api [0.8 111004]
org.gephi.io.generator.plugin [0.8.0.1 111004]
org.gephi.ui.generator.plugin [0.8 111004]
org.gephi.filters.api [0.8.0.3 111231]
org.gephi.timeline [0.8 111004]
org.gephi.filters.plugin [0.8.0.4 111231]
org.gephi.ui.filters.plugin [0.8.0.3 111231]
org.gephi.lib.itext [5.0.1 111004]
org.gephi.io.exporter.api [0.8 111004]
org.gephi.lib.batik [1.7 111004]
org.gephi.lib.processing [1.5.1 111004]
org.gephi.preview.api [0.8.1.4 120107]
org.gephi.io.exporter.preview [0.8.0.4 120107]
org.gephi.ui.exporter.preview [0.8.0.1 111004]
org.gephi.lib.staxutils [1.0 111004]
org.gephi.io.exporter.plugin [0.8.0.3 111004]
org.gephi.ui.exporter.plugin [0.8.0.3 111004]
org.gephi.lib.timing [1.1 111004]
org.gephi.ui.components.SplineEditor [0.8.0.1 111004]
org.gephi.algorithms [0.8.0.1 111231]
org.gephi.perspective.api [0.8 111231]
org.gephi.desktop.perspective [0.8.2 111231]
org.gephi.tools.plugin [0.8.0.2 120101]
org.gephi.preview.plugin [0.8.1.3 120107]
org.gephi.layout.api [0.8.0.1 111004]
org.gephi.layout.plugin [0.8.0.3 111004]
org.gephi.graph.dhns [0.8.0.5 111231]
org.gephi.filters [0.8.0.3 111231]
org.gephi.dynamic [0.8.0.3 111004]
org.gephi.desktop.welcome [0.8.0.1 111004]
org.gephi.desktop.tools [0.8.0.3 111004]
org.gephi.desktop.timeline [0.8 111004]
org.gephi.desktop.statistics [0.8.1 111004]
org.gephi.desktop.spigot [0.8 111004]
org.gephi.desktop.recentfiles [1.0.1 111004]
org.gephi.desktop.ranking [0.8.1.2 120101]
org.gephi.desktop.progress [0.8.0.3 111004]
org.gephi.desktop.io.export [0.8.0.1 111004]
org.gephi.desktop.preview [0.8.1.3 120107]
org.gephi.desktop.partition [0.8 111004]
org.gephi.desktop.layout [0.8.0.3 120101]
org.gephi.desktop.importer [0.8.0.1 111004]
org.gephi.desktop.hierarchy [0.8 111004]
org.gephi.desktop.generate [0.8 111004]
org.gephi.desktop.filters [0.8.0.1 120101]
org.gephi.desktop.datalab [0.8.0.7 120101]
org.gephi.desktop.context [0.8 111004]
org.gephi.clustering.api [0.8 111004]
org.gephi.desktop.clustering [0.8 111004]
org.gephi.datalab.plugin [0.8.0.8 120101]
org.gephi.data.attributes [0.8.0.2 111231]
org.gephi.clustering.plugin [0.8 111004]
org.gephi.branding.desktop [0.8.0.6 120101]
org.netbeans.core.windows.view.ui.MainWindow$4[null.nbGlassPane,0,0,0x0,invalid,hidden,layout=java.awt.FlowLayout,alignmentX=0.0,alignmentY=0.0,border=,flags=16777217,maximumSize=,minimumSize=,preferredSize=]
GL_VENDOR: NVIDIA Corporation
GL_RENDERER: Quadro FX 770M/PCI/SSE2
GL_VERSION: 3.0.0
Diagnostic information
Input arguments:
-Xms64m
-Xmx512m
-Dsun.java2d.noddraw=true
-Dsun.awt.noerasebackground=true
-Dnetbeans.user.dir=F:\p_run
-Djdk.home=C:\Program
Files
(x86)\Java\jdk1.6.0_18
-splash:C:\Users\user\AppData\Roaming.GEPHI\dev\var\cache\splash.png
-Dnetbeans.home=C:\Program
Files
(x86)\Gephi\platform
-Dnetbeans.user=C:\Users\user\AppData\Roaming.GEPHI\dev
-XX:+HeapDumpOnOutOfMemoryError
-XX:HeapDumpPath=C:\Users\user\AppData\Roaming.GEPHI\dev\var\log\heapdump.hprof
-Dnetbeans.system_http_proxy=DIRECT
-Dsun.awt.keepWorkingSetOnMinimize=true
-Dnetbeans.dirs=C:\Program
Files
(x86)\Gephi\gephi
Compiler: HotSpot Tiered Compilers
Heap memory usage: initial 64,0MB maximum 455,1MB
Non heap memory usage: initial 18,2MB maximum 112,0MB
Garbage collector: PS Scavenge (Collections=3 Total time spent=0s)
Garbage collector: PS MarkSweep (Collections=0 Total time spent=0s)
Classes: loaded=4907 total loaded=4907 unloaded 0
INFO [org.netbeans.core.ui.warmup.DiagnosticTask]: Total memory 4.294.967.295
INFO [null]: Gesamter physischer Speicher 4.294.967.295
WARNING [org.openide.filesystems.Ordering]: Not all children in Menu/Window/ marked with the position attribute: [TimelineAction.shadow], but some are: [ClusteringAction.shadow, ContextAction.shadow, DataTableAction.shadow, FiltersAction.shadow, GraphAction.shadow, HierarchyAction.shadow, LayoutAction.shadow, PartitionAction.shadow, PreviewAction.shadow, PreviewSettingsAction.shadow, RankingAction.shadow, StatisticsAction.shadow, WelcomeAction.shadow, Separator3.instance, CloseWindowAction.shadow, MaximizeWindowAction.shadow, org-netbeans-core-windows-actions-UndockAction.shadow, Separator4.instance, Separator4_1.instance]

Nodes loaded: 4

Edges loaded: 5

WARNING [org.netbeans.modules.autoupdate.updateproviders.AutoupdateCatalogFactory]: Services/AutoupdateType/org_gephi_branding_desktop_update_center.instance: url_key attribute deprecated in favor of url
WARNING [org.netbeans.modules.autoupdate.updateproviders.AutoupdateCatalogFactory]: Services/AutoupdateType/org_gephi_branding_desktop_update_center_1.instance: url_key attribute deprecated in favor of url

mbastian was assigned Jan 24, 2012

Owner

mbastian commented Jan 24, 2012

Thanks for notifying this. It looks like the edges are not updated if their is no changes in the structure (add/removal of edges) regardless if the interval changed. I'm adding an dynamic model event listener so the engine can refresh edge data.

@mbastian mbastian added a commit to mbastian/gephi that referenced this issue Jan 24, 2012

@mbastian mbastian Fix issue #513 619c709

mbastian closed this Jan 24, 2012

neuma commented Mar 1, 2012

milestone 0.9?! Does this mean the bugfix will not be applied to the
forthcoming 0.8 release?

According to the label, this issue was fixed for 0.8.1. i'm using 0.8.2 and see a similar issue with the streaming plugin when sending edge updates - the "Overview" doesn't refresh unless I manually do it (e.g. clicking the "Show Hulls" button). This might be an unrelated issue and perhaps related to the streaming plugin, but I thought I'd start by just commenting here first - any guidance?

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