[2020-03-31 02:56:55 AM] INFO: Running command: /home/jianchang/software/miniconda3/envs/enrichm_0.5.0/bin/enrichm enrichment --output MGII_enrichment --annotate_output mgii_annotation --metadata metadata.txt --threshold 32 --ko --force
[2020-03-31 02:56:55 AM] INFO: Loading databases
[2020-03-31 02:56:55 AM] INFO: Loading reference db paths
[2020-03-31 02:56:55 AM] INFO: Parsing annotate output: mgii_annotation
[2020-03-31 02:56:55 AM] INFO: Parsing annotations
[2020-03-31 02:56:55 AM] INFO: Parsing metadata
[2020-03-31 02:56:55 AM] INFO: Comparing sets of genomes
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 18, 3
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 18, 2
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 18, 6
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 18, 0
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 18, 4
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 18, 7
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 18, 5
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 18, 12
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 18, 15
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 3, 2
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 3, 6
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 3, 0
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 3, 4
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 3, 7
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 3, 5
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:56 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:56 AM] INFO: Comparing gene frequency among groups: 3, 12
[2020-03-31 02:56:56 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:56 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:56 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:56 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:57 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:57 AM] INFO: Comparing gene frequency among groups: 3, 15
[2020-03-31 02:56:57 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:57 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:57 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:57 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:57 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:57 AM] INFO: Comparing gene frequency among groups: 2, 6
[2020-03-31 02:56:57 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:57 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:57 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:57 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:57 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:57 AM] INFO: Comparing gene frequency among groups: 2, 0
[2020-03-31 02:56:57 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:57 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:57 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:57 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:57 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:57 AM] INFO: Comparing gene frequency among groups: 2, 4
[2020-03-31 02:56:57 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:57 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:57 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:57 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:57 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:57 AM] INFO: Comparing gene frequency among groups: 2, 7
[2020-03-31 02:56:57 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:57 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:57 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:57 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:57 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:57 AM] INFO: Comparing gene frequency among groups: 2, 5
[2020-03-31 02:56:57 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:57 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:57 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:57 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:57 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:57 AM] INFO: Comparing gene frequency among groups: 2, 12
[2020-03-31 02:56:57 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:57 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:57 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:57 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:57 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:57 AM] INFO: Comparing gene frequency among groups: 2, 15
[2020-03-31 02:56:57 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:57 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:57 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:57 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:57 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:57 AM] INFO: Comparing gene frequency among groups: 6, 0
[2020-03-31 02:56:57 AM] INFO: Testing gene enrichment using Fisher's exact test
[2020-03-31 02:56:57 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:57 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:57 AM] INFO: Testing over-representation using Mann-Whitney U test
[2020-03-31 02:56:58 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:58 AM] INFO: Comparing gene frequency among groups: 6, 4
[2020-03-31 02:56:58 AM] INFO: Testing gene enrichment using Fisher's exact test
[2020-03-31 02:56:58 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:58 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:58 AM] INFO: Testing over-representation using Mann-Whitney U test
[2020-03-31 02:56:58 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:58 AM] INFO: Comparing gene frequency among groups: 6, 7
[2020-03-31 02:56:58 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:58 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:58 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:58 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:56:58 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:58 AM] INFO: Comparing gene frequency among groups: 6, 5
[2020-03-31 02:56:58 AM] INFO: Testing gene enrichment using Fisher's exact test
[2020-03-31 02:56:59 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:59 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:59 AM] INFO: Testing over-representation using Mann-Whitney U test
[2020-03-31 02:56:59 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:59 AM] INFO: Comparing gene frequency among groups: 6, 12
[2020-03-31 02:56:59 AM] INFO: Testing gene enrichment using Fisher's exact test
[2020-03-31 02:56:59 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:59 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:59 AM] INFO: Testing over-representation using Mann-Whitney U test
[2020-03-31 02:56:59 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:56:59 AM] INFO: Comparing gene frequency among groups: 6, 15
[2020-03-31 02:56:59 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:56:59 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:56:59 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:56:59 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:57:00 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:00 AM] INFO: Comparing gene frequency among groups: 0, 4
[2020-03-31 02:57:00 AM] INFO: Testing gene enrichment using Fisher's exact test
[2020-03-31 02:57:00 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:00 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:00 AM] INFO: Testing over-representation using Mann-Whitney U test
[2020-03-31 02:57:00 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:00 AM] INFO: Comparing gene frequency among groups: 0, 7
[2020-03-31 02:57:00 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:57:00 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:57:00 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:00 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:57:00 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:00 AM] INFO: Comparing gene frequency among groups: 0, 5
[2020-03-31 02:57:00 AM] INFO: Testing gene enrichment using Fisher's exact test
[2020-03-31 02:57:01 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:01 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:01 AM] INFO: Testing over-representation using Mann-Whitney U test
[2020-03-31 02:57:01 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:01 AM] INFO: Comparing gene frequency among groups: 0, 12
[2020-03-31 02:57:01 AM] INFO: Testing gene enrichment using Fisher's exact test
[2020-03-31 02:57:01 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:01 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:01 AM] INFO: Testing over-representation using Mann-Whitney U test
[2020-03-31 02:57:01 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:01 AM] INFO: Comparing gene frequency among groups: 0, 15
[2020-03-31 02:57:01 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:57:01 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:57:01 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:01 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:57:02 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:02 AM] INFO: Comparing gene frequency among groups: 4, 7
[2020-03-31 02:57:02 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:57:02 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:57:02 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:02 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:57:02 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:02 AM] INFO: Comparing gene frequency among groups: 4, 5
[2020-03-31 02:57:02 AM] INFO: Testing gene enrichment using Fisher's exact test
[2020-03-31 02:57:02 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:02 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:02 AM] INFO: Testing over-representation using Mann-Whitney U test
[2020-03-31 02:57:02 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:02 AM] INFO: Comparing gene frequency among groups: 4, 12
[2020-03-31 02:57:02 AM] INFO: Testing gene enrichment using Fisher's exact test
[2020-03-31 02:57:02 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:02 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:02 AM] INFO: Testing over-representation using Mann-Whitney U test
[2020-03-31 02:57:02 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:02 AM] INFO: Comparing gene frequency among groups: 4, 15
[2020-03-31 02:57:02 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:57:02 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:57:02 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:02 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:57:02 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:02 AM] INFO: Comparing gene frequency among groups: 7, 5
[2020-03-31 02:57:02 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:57:02 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:57:02 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:02 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:57:02 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:02 AM] INFO: Comparing gene frequency among groups: 7, 12
[2020-03-31 02:57:02 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:57:02 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:57:02 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:02 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:57:02 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:02 AM] INFO: Comparing gene frequency among groups: 7, 15
[2020-03-31 02:57:02 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:57:02 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:57:02 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:02 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:57:03 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:03 AM] INFO: Comparing gene frequency among groups: 5, 12
[2020-03-31 02:57:03 AM] INFO: Testing gene enrichment using Fisher's exact test
[2020-03-31 02:57:03 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:03 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:03 AM] INFO: Testing over-representation using Mann-Whitney U test
[2020-03-31 02:57:03 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:03 AM] INFO: Comparing gene frequency among groups: 5, 15
[2020-03-31 02:57:03 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:57:03 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:57:03 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:03 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:57:03 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:03 AM] INFO: Comparing gene frequency among groups: 12, 15
[2020-03-31 02:57:03 AM] INFO: enrichment statistics not possible with only one genome to compare
[2020-03-31 02:57:03 AM] INFO: See prevalence matrix for unique genes in groups
[2020-03-31 02:57:03 AM] INFO: Comparing gene over-representation among genomes
[2020-03-31 02:57:03 AM] INFO: Testing over-representation using Z score test
[2020-03-31 02:57:03 AM] INFO: Applying multi-test correction using the FDR Benjamini-Hochberg method
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/18_vs_3_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/18_vs_2_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/18_vs_6_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/18_vs_0_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/18_vs_4_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/18_vs_7_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/18_vs_5_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/18_vs_12_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/18_vs_15_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/3_vs_2_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/3_vs_6_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/3_vs_0_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/3_vs_4_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/3_vs_7_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/3_vs_5_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/3_vs_12_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/3_vs_15_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/2_vs_6_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/2_vs_0_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/2_vs_4_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/2_vs_7_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/2_vs_5_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/2_vs_12_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/2_vs_15_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/6_vs_0_gvg_results.fisher.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/6_vs_0_gvg_results.mannwhitneyu.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/6_vs_4_gvg_results.fisher.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/6_vs_4_gvg_results.mannwhitneyu.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/6_vs_7_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/6_vs_5_gvg_results.fisher.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/6_vs_5_gvg_results.mannwhitneyu.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/6_vs_12_gvg_results.fisher.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/6_vs_12_gvg_results.mannwhitneyu.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/6_vs_15_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/0_vs_4_gvg_results.fisher.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/0_vs_4_gvg_results.mannwhitneyu.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/0_vs_7_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/0_vs_5_gvg_results.fisher.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/0_vs_5_gvg_results.mannwhitneyu.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/0_vs_12_gvg_results.fisher.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/0_vs_12_gvg_results.mannwhitneyu.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/0_vs_15_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/4_vs_7_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/4_vs_5_gvg_results.fisher.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/4_vs_5_gvg_results.mannwhitneyu.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/4_vs_12_gvg_results.fisher.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/4_vs_12_gvg_results.mannwhitneyu.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/4_vs_15_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/7_vs_5_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/7_vs_12_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/7_vs_15_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/5_vs_12_gvg_results.fisher.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/5_vs_12_gvg_results.mannwhitneyu.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/5_vs_15_ivg_results.cdf.tsv
[2020-03-31 02:57:03 AM] INFO: Writing results to file: MGII_enrichment/12_vs_15_ivg_results.cdf.tsv
[2020-03-31 02:57:04 AM] INFO: Writing results to file: MGII_enrichment/proportions.tsv
[2020-03-31 02:57:04 AM] INFO: Generating summary plots
[2020-03-31 02:57:04 AM] INFO: Finding module completeness in differentially abundant KOs
[2020-03-31 02:57:04 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:04 AM] INFO: Writing results to file: MGII_enrichment/3_vs_18_modules.tsv
[2020-03-31 02:57:04 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:04 AM] INFO: Writing results to file: MGII_enrichment/2_vs_18_modules.tsv
[2020-03-31 02:57:04 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:04 AM] INFO: Writing results to file: MGII_enrichment/6_vs_18_modules.tsv
[2020-03-31 02:57:04 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:05 AM] INFO: Writing results to file: MGII_enrichment/0_vs_18_modules.tsv
[2020-03-31 02:57:05 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:05 AM] INFO: Writing results to file: MGII_enrichment/4_vs_18_modules.tsv
[2020-03-31 02:57:05 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:05 AM] INFO: Writing results to file: MGII_enrichment/7_vs_18_modules.tsv
[2020-03-31 02:57:05 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:05 AM] INFO: Writing results to file: MGII_enrichment/5_vs_18_modules.tsv
[2020-03-31 02:57:05 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:05 AM] INFO: Writing results to file: MGII_enrichment/12_vs_18_modules.tsv
[2020-03-31 02:57:05 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:05 AM] INFO: Writing results to file: MGII_enrichment/15_vs_18_modules.tsv
[2020-03-31 02:57:05 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:05 AM] INFO: Writing results to file: MGII_enrichment/2_vs_3_modules.tsv
[2020-03-31 02:57:05 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:05 AM] INFO: Writing results to file: MGII_enrichment/6_vs_3_modules.tsv
[2020-03-31 02:57:05 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:05 AM] INFO: Writing results to file: MGII_enrichment/0_vs_3_modules.tsv
[2020-03-31 02:57:05 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:05 AM] INFO: Writing results to file: MGII_enrichment/4_vs_3_modules.tsv
[2020-03-31 02:57:05 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:05 AM] INFO: Writing results to file: MGII_enrichment/7_vs_3_modules.tsv
[2020-03-31 02:57:05 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:06 AM] INFO: Writing results to file: MGII_enrichment/5_vs_3_modules.tsv
[2020-03-31 02:57:06 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:06 AM] INFO: Writing results to file: MGII_enrichment/12_vs_3_modules.tsv
[2020-03-31 02:57:06 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:06 AM] INFO: Writing results to file: MGII_enrichment/15_vs_3_modules.tsv
[2020-03-31 02:57:06 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:06 AM] INFO: Writing results to file: MGII_enrichment/6_vs_2_modules.tsv
[2020-03-31 02:57:06 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:06 AM] INFO: Writing results to file: MGII_enrichment/0_vs_2_modules.tsv
[2020-03-31 02:57:06 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:06 AM] INFO: Writing results to file: MGII_enrichment/4_vs_2_modules.tsv
[2020-03-31 02:57:06 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:06 AM] INFO: Writing results to file: MGII_enrichment/7_vs_2_modules.tsv
[2020-03-31 02:57:06 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:06 AM] INFO: Writing results to file: MGII_enrichment/5_vs_2_modules.tsv
[2020-03-31 02:57:06 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:06 AM] INFO: Writing results to file: MGII_enrichment/12_vs_2_modules.tsv
[2020-03-31 02:57:06 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:06 AM] INFO: Writing results to file: MGII_enrichment/15_vs_2_modules.tsv
[2020-03-31 02:57:06 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:06 AM] INFO: Writing results to file: MGII_enrichment/6_vs_0_modules.tsv
[2020-03-31 02:57:06 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:06 AM] INFO: Writing results to file: MGII_enrichment/6_vs_4_modules.tsv
[2020-03-31 02:57:06 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:07 AM] INFO: Writing results to file: MGII_enrichment/6_vs_7_modules.tsv
[2020-03-31 02:57:07 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:07 AM] INFO: Writing results to file: MGII_enrichment/6_vs_5_modules.tsv
[2020-03-31 02:57:07 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:07 AM] INFO: Writing results to file: MGII_enrichment/6_vs_12_modules.tsv
[2020-03-31 02:57:07 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:07 AM] INFO: Writing results to file: MGII_enrichment/6_vs_15_modules.tsv
[2020-03-31 02:57:07 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:07 AM] INFO: Writing results to file: MGII_enrichment/0_vs_4_modules.tsv
[2020-03-31 02:57:07 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:07 AM] INFO: Writing results to file: MGII_enrichment/0_vs_7_modules.tsv
[2020-03-31 02:57:07 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:07 AM] INFO: Writing results to file: MGII_enrichment/0_vs_5_modules.tsv
[2020-03-31 02:57:07 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:07 AM] INFO: Writing results to file: MGII_enrichment/0_vs_12_modules.tsv
[2020-03-31 02:57:07 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:07 AM] INFO: Writing results to file: MGII_enrichment/0_vs_15_modules.tsv
[2020-03-31 02:57:07 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:07 AM] INFO: Writing results to file: MGII_enrichment/4_vs_7_modules.tsv
[2020-03-31 02:57:07 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:07 AM] INFO: Writing results to file: MGII_enrichment/4_vs_5_modules.tsv
[2020-03-31 02:57:07 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:08 AM] INFO: Writing results to file: MGII_enrichment/4_vs_12_modules.tsv
[2020-03-31 02:57:08 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:08 AM] INFO: Writing results to file: MGII_enrichment/4_vs_15_modules.tsv
[2020-03-31 02:57:08 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:08 AM] INFO: Writing results to file: MGII_enrichment/5_vs_7_modules.tsv
[2020-03-31 02:57:08 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:08 AM] INFO: Writing results to file: MGII_enrichment/12_vs_7_modules.tsv
[2020-03-31 02:57:08 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:08 AM] INFO: Writing results to file: MGII_enrichment/15_vs_7_modules.tsv
[2020-03-31 02:57:08 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:08 AM] INFO: Writing results to file: MGII_enrichment/5_vs_12_modules.tsv
[2020-03-31 02:57:08 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:08 AM] INFO: Writing results to file: MGII_enrichment/5_vs_15_modules.tsv
[2020-03-31 02:57:08 AM] INFO: 	- Generating KO breakdown plots
[2020-03-31 02:57:08 AM] INFO: Writing results to file: MGII_enrichment/12_vs_15_modules.tsv
[2020-03-31 02:57:08 AM] INFO: 	- Generating PCA plot
[2020-03-31 02:57:08 AM] INFO: Done!