Analysis scripts for Monash/Trinity Big Dots study
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Analyses Scripts_R
Plots
.gitignore
10-5-System_Mastoids_EGI129.csd
BP_chanlocs.mat
BigDotsAnalysis.docx
BigDots_ERP_analysis.m
BigDots_ERP_analysis_alpha.m
BigDots_ERP_analysis_beta.m
BigDots_ERP_analysis_beta_TSE.m
BigDots_ERP_analysis_zscore.asv
BigDots_ERP_analysis_zscore.m
BigDots_behaviour_analysis.m
BigDots_behaviour_analysis_SLF.m
Big_dots_behave.m
CPP_DAT1_by_Hemifield.png
Check4badchans_BigDots.m
DAT1genotypes_for_Matlab.xlsx
DAT1genotypesforMatlab.mat
EEGFileRenamer.m
Extract_for_R_BigDots.m
Extract_for_R_BigDots_resp_locked_ERP.m
Extract_for_R_BigDots_resp_locked_beta.m
Extract_for_R_BigDots_resp_locked_beta_TSE.m
Extract_for_R_BigDots_stim_locked_ERP.m
Extract_for_R_BigDots_stim_locked_beta.m
Extract_for_R_BigDots_stim_locked_beta_TSE.m
FixEyelinkMessages.m
ID_vector_BigDots.csv
ID_vector_Resp_locked_beta.csv
ID_vector_Stim_locked_beta.csv
IDs.csv
IDs_alpha.csv
Monash_preprocess_BigDots.m
README.md
SCD_CPP_resp_locked.png
SCD_CPP_stim_locked.png
SCD_N2c.png
SCD_N2i.png
STFT_for_Dan.m
TCD_preprocess_BigDots.m
Thumbs.db
actiCAP64_ThetaPhi.elp
actiCAP65_ThetaPhi.elp
allbadchans_DN.m
allbadchans_GL.m
cap64.loc
cell2csv.m
chans64.asc
chans64_monash.asc
chans65_monash.asc
command_window_text.m
file_exist_checker.m
getChannelVars_BigDots.m
get_SLF_from_excel.asv
get_SLF_from_excel.m
get_times_from_excel.m
getbadchans.m
good_sync.png
letterkilla_old.m
license.md
loadbvSK_DN.m
master_matrix_R_BigDots.csv
master_matrix_R_Resp_locked_beta.csv
master_matrix_R_Stim_locked_beta.csv
parsebvmrk.m
participant_level_alpha_matrix.csv
participant_level_matrix.csv
pop_loadbv.m
pre_target beta baseline.png
readbvconf.m
resp_locked_example.m
resp_locked_example.mat
runafew_BigDots.m
slf_mat.mat
test_times.mat
wspacekiller.m
~$gDotsAnalysis.docx

README.md

big_dots

Analysis scripts for Monash/Trinity Big Dots study

##Analysis Pipeline:

###In Matlab, run scripts to process raw eeg files:

(note: In future you can skip steps 1 to 3 because they were just for renaming incorrectly named files and finding noisy eeg channeles, which will already have been found and listed in 'runafew.m' for step 4)

  1. 'EEGFileRenamer.m' - to rename the eeg data files of a few of the Monash participants for which some blocks were originally saved with incorect filename
  2. 'getChannelVars_BigDots.m' - to extract a measure of electrode noise
  3. 'Check4badchans_BigDots.m' - checks for noisy channeles, you manually list any noisy channeles in 'runafew_BL.m'
  4. 'runafew_BigDots.m' - calls a scriot to extract RT as well as epochs for ERP, Alpha and Pupil Diameter

License

Creative Commons License
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License.