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README.md

FunSeq2

Introduction

A flexible framework to annotate and prioritize cancer somatic mutations.

Please refer to http://info.gersteinlab.org/Funseq2 for information on installing and running FunSeq2.

Data context can be downloaded from http://funseq2.gersteinlab.org/data/

Scores for all possible noncoding SNVs can be downloaded from http://funseq2.gersteinlab.org/downloads

This software is freely licensed under the Creative Commons license (Attribution-NonCommerical).The main aspects of this license are that: The work can be made available for non-commercial use Derivatives can be made of the work Derivatives do not have to be made available under the same terms that they were first used, and We should be cited.

Change logs

Latest version:

  • v2.1.4: .. Add the support for the function analysis of positions with multiple possible alleles .. Add the support to change the default name of config.txt. .. Fixed some minor bugs

  • v2.1.2: .. Changed the data context to add Roadmap Epigenome enhancer and enhancer-gene linkage .. Fixed some minor bugs

  • v2.1.0: .. The original version (funseq2.1.0.tar.gz) was frozen.

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A flexible framework to annotate and prioritize cancer somatic mutations.

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