10 results for repositories written in Python
  • RADAR source code

    Python Updated Oct 8, 2018
  • Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles

    Python 2 2 Updated Sep 19, 2018
  • ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the human genome.

    Python 10 2 CC0-1.0 Updated Aug 30, 2018
  • Using sliding window to extract k-mers for annotation (specfically exons) in GTF format

    Python GPL-3.0 Updated Aug 20, 2018
  • TF Motif Variant Analysis

    Python Updated Aug 4, 2018
  • Python 1 Updated Apr 3, 2018
  • Output files and source code for our project predicting functional upstream open reading frames.

    Python 1 Updated Sep 26, 2018
  • The package includes the AlleleDB pipeline developed in the Gerstein Lab at Yale. This pipeline was built and applied to perform a uniform identification of SNVs associated with allele-specific binding and expression in 382 individuals from the 1000 Genomes Project. Please see website for more detailed README.

    Python 2 Updated Aug 28, 2016
  • Python 1 GPL-3.0 Updated Aug 16, 2016
  • Moving big files around the network

    Python Updated Jun 13, 2015

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