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$$P = [M | -MC]$$ was converted to
<td>$$ P = [M</td>
it should be
<script type="math/tex; mode=display">% <![CDATA[
P = [M | -MC]
it has problems with | in equation
Thanks for reporting, this is a known problem.
Block math statements will be parsed correctly in the next version of kramdown, even if they contain a pipe symbol. See commit c8779f4