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Accurate detection of somatic MS (microsatellite) indels.

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MSmutect v2

Detecting microsatelite indels from paired BAMs By Yosi Maruvka

Reference file:

The loci file for hg38: gs://getzlab-workflows-reference_files-oa/hg38/msmutect/hg38_1_to_15_loci.phobos

Please checkout MSMutect_v2.0.1.sh for the workflow logic. More information on outputs of the workflow, please check the original MSmutect repo

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Accurate detection of somatic MS (microsatellite) indels.

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