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; eGFRD power-spectrum simulation
[Variables]
V = 1e-15 ; 1 femto liter
c = 0.4E-6 ; Concentration in Molar
N = round(concentration(c, V)) ; Number of particles
[Simulator]
EndTime = 60.0 ; sec.
MaintenanceStep = 1000000
MaintenanceFile = sim_dump.out
[World]
Matrix = 8
Size = (1e-3 * V) ^ (1/3) ; Liter to cube-length in meter
[SpeciesType]
Name = A
r = 5e-9 ; m
D = 0 ; fixed
[SpeciesType]
Name = B
r = 5e-9 ; m
D = 1e-12 ; m^2*s^-1
[SpeciesType]
Name = C
r = 1e-8 ; m
D = 0 ; fixed
[ReactionRule]
Rule = A + B <=> C
ka = 9.16639e-19 ; m^3*s^-1
kd = 220.8 ; s^-1
[Particles]
A = 1
B = N
C = 0
[ReactionRecord]
File = power_rec.dat
[Progress]
Width = 60