updated cran comments for submission

.helper_functions

@@ -50,7 +50,8 @@ reverse_depends:
   do_check <- function() {
     devtools::revdep_check(
       bioconductor = TRUE,
-      ignore = c("nzelect"),
+      # ignore = c("nzelect"),
+      ignore = c(),
       libpath = .libPaths()[1],
       srcpath = normalizePath(file.path("revdep", "lib"))
     )

cran-comments.md

@@ -1,82 +1,75 @@
 
 ## Comments
 
-### 2017-6-7
+### 2017-8-2
 
-vortexR has been updated to handle the new version of GGally.  From my reverse dependency checks, there were no other affected packages.  <https://github.com/ggobi/ggally/blob/master/revdep/problem-diff.txt>
+No revdep authors were emailed as it is only small bug fixes or 'Suggest' dependency change for Brian.
+
+Please let me know if there is anything I can do.  Thank you for your time.
 
 Best,
 Barret
 
 
-### 2017-6-7
-
-On CRAN
-- @carlopacioni vortexR maintainer
-
-
-### 2017-6-4
-
-vortexR maintainer contacted.
-
+### 2017-7-18
 
-### 2017-6-4
+As §1.1.3.1 of the manual told you, packages in Suggests: should be used
+conditionally.  The latest version of igraph will not install on Solaris
+(hence packages strictly depending on it), and as you can see from its
+CRAN checks page, your package now fails its check.
 
-~ Please give two weeks notice to affected packages.
-- Uwe
+Please correct ASAP and definitely within a month.
 
+--
+Brian D. Ripley,
 
-### 2017-6-2
-
-No revdep authors were emailed as it is only small bug fixes, url link fixes, and new functions.
-
-Please let me know if there is anything I can do.  Thank you for your time.
-
-Best,
-Barret
 
 
 #### Test environments and R CMD check results
 
 * local OS X install
-  * R version 3.4.0 (2017-04-21)
+  * R version 3.4.1 (2017-06-30)
     Platform: x86_64-apple-darwin15.6.0 (64-bit)
-    Running under: macOS Sierra 10.12.4
+    Running under: macOS Sierra 10.12.5
     * 0 errors | 0 warnings | 0 notes
 
 * travis-ci
-  * R version 3.4.0 (2017-04-21)
+  * R version 3.4.1 (2017-06-30)
     Platform: x86_64-pc-linux-gnu (64-bit)
     Running under: Ubuntu precise (12.04.5 LTS)
     * 0 errors | 0 warnings | 0 notes
 
-  * R Under development (unstable) (2017-05-24 r72734)
+  * R Under development (unstable) (2017-08-01 r73010)
     Platform: x86_64-pc-linux-gnu (64-bit)
     Running under: Ubuntu precise (12.04.5 LTS)
     * 0 errors | 0 warnings | 0 notes
 
 * win-builder (devel and release)
-  * R version 3.4.0 (2017-04-21)
+  * R version 3.4.1 (2017-06-30)
     * 0 errors | 0 warnings | 0 notes
-  * R Under development (unstable) (2017-06-01 r72753)
+  * R Under development (unstable) (2017-07-31 r73003)
     * 0 errors | 0 warnings | 0 notes
 
 
 ## Reverse dependencies
 
 Checked on
-  * R version 3.4.0 (2017-04-21)
+  * R version 3.4.1 (2017-06-30)
     Platform: x86_64-apple-darwin15.6.0 (64-bit)
-    Running under: macOS Sierra 10.12.4
+    Running under: macOS Sierra 10.12.5
 
 No difference in test results due to GGally upgrade: <https://github.com/ggobi/ggally/blob/master/revdep/problem-diff.txt>
 
 
 Errors not related to GGally upgrade:
-* Failed to install dependencies for: MissingDataGUI, specmine
-* ggbio: checking examples ... ERROR
-* POUMM: checking re-building of vignette outputs ... WARNING
-* TVTB: checking tests ... ERROR
 
-* Check failed to finish in 20 minutes, so ignored
-  * nzelect
+|package        |version | errors| warnings| notes|
+|:--------------|:-------|------:|--------:|-----:|
+|eechidna       |1.1     |      0|        1|     1| - vignette building
+|nzelect        |0.3.3   |      0|        1|     0| - vignette building
+|PopGenReport   |3.0.0   |      0|        1|     1| - due to missing package dependencies
+|POUMM          |1.3.2   |      1|        0|     0| - can not install source package
+|MissingDataGUI |0.2-5   |      1|        0|     0| - can not install dependencies
+|specmine       |1.0     |      1|        0|     0| - can not install dependencies
+
+* Side note, package 'Pi' took over 4 hours to check.