• GEM software suite (GEM, GPS, KMAC, KSM, RMD, etc.)

    Java 1 Updated Jul 4, 2018
  • Perform hyper-parameter tuning, training, testing and prediction with Keras

    Python 24 13 Updated May 29, 2018
  • Launch scripts and containers for our Jupyterhub server.

    Python 1 Updated Feb 7, 2018
  • Opinionated stacks of ready-to-run Jupyter applications in Docker. Forked to add GPU capabilities.

    Makefile 13 1,138 Updated Feb 7, 2018
  • The source code for GERV method

    R 5 2 Apache-2.0 Updated Nov 7, 2017
  • DEPRECATED. Multi-user server for Jupyter notebooks. Forked to add client certificate authentication.

    Python 2 773 Updated Oct 18, 2017
  • A tool that lauches docker jobs on Amazon EC2.

    Python 7 2 Updated Sep 25, 2017
  • Python 4 3 Apache-2.0 Updated Feb 14, 2017
  • Winner algorithm for CAGI4 eQTL-causal SNP challenge

    C 1 Apache-2.0 Updated Nov 16, 2016
  • Jupyter Notebook Updated Nov 11, 2016
  • kmer model launch scripts

    R 1 Updated Oct 6, 2016
  • Docker image for running DeepSEA for predicting

    Shell 2 1 Updated Aug 29, 2016
  • Docker image for the DeepSEA method.

    Lua 3 1 Updated Jul 31, 2016
  • Wrapper integrating Mri and caffe-cnn

    Python 8 2 Updated Jul 25, 2016
  • Caffe-based convolutional neural network

    Python 3 5 Updated Jul 25, 2016
  • Simple method to protect web content by group name on CSAIL servers.

    Python Updated May 22, 2016
  • Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. Forked to get automated Docker builds.

    Python 264 MIT Updated Jan 22, 2016
  • Docker image for the DeepBind method.

    Python 9 2 Updated Nov 7, 2015
  • Automated discovery of functional generality of gene expression

    HTML Updated Jul 29, 2015
  • Updated Jul 29, 2015
  • High resolution peak calling and motif discovery for ChIP-seq and ChIP-exo data

    Java 1 Updated Jul 29, 2015
  • High Resolution Modeling of Chromatin Interactions

    Java Updated Jul 29, 2015
  • A Docker container that properly handles signals and will run in SGE.

    Python 1 Updated May 7, 2015
  • Track and respond to email list messages.

    Shell Updated Sep 3, 2014
  • Misc tools for dealing with shortreads and bams

    Shell 1 Updated Aug 24, 2014