@gigascience

GigaScience Journal

Pinned repositories

  1. gigadb-website

    Source code for running GigaDB

    PHP 1 8

  • Source code for running the WordPress GigaBlog website

    PHP Updated Mar 1, 2017
  • Source code for running GigaDB

    PHP 1 8 Updated Feb 15, 2017
  • Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Painting assay.

    Shell Updated Dec 13, 2016
  • Perl 1 1 Updated Oct 3, 2016
  • JavaScript 1 Updated Apr 7, 2016
  • Source code from Jarvis et al., (2015) Phylogenomic analyses data of the avian phylogenomics project. GigaScience 4:4.

    Python Updated Mar 22, 2016
  • A GA4GH Draft Beacon implementation

    Python 8 Updated Jan 28, 2016
  • Galaxy wrappers for the SmileFinder set of tools.

    Updated Dec 9, 2015
  • Galaxy wrappers for BGI's SOAP tools including SOAPdenovo2.

    Python 1 Updated Nov 30, 2015
  • Updated Nov 20, 2015
  • Data intensive biology for everyone.

    Python 307 Updated Nov 18, 2015
  • Web application for displaying Galaxy workflows using cytoscape.js

    JavaScript Updated Oct 12, 2015
  • PHP 1 Updated Sep 23, 2015
  • Demo application for AWS project

    JavaScript Updated Sep 21, 2015
  • Docker image and Galaxy tools from Aranguren and Wilkinson (2015) Enhanced reproducibility of SADI web service workflows with Galaxy and Docker.

    Python 1 Updated Sep 7, 2015
  • Source code from Chiu and Hsu, (2015) Determination of Nonlinear Genetic Architecture using Compressed Sensing.

    Matlab 3 Updated Aug 20, 2015
  • TeX 4 Updated Jun 26, 2015
  • Galaxy wrappers for the Genome Diversity set of tools from Bedoya-Reina et al., (2013) Galaxy tools to study genome diversity. GigaScience 2:17

    Python Updated Jun 4, 2015
  • Galaxy wrapping of the analysis developed by Genome Assembly Gold-Standard Evaluations (GAGE).

    Updated May 20, 2015
  • A Galaxy wrapper to return bacterial genome assemblies made by ALL-PATHS presented in Luo et al., (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 2012, 1:18

    Updated May 20, 2015
  • Genome assembly pipelines from Luo et al., (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1:18

    Perl Updated May 20, 2015
  • Source code from Sonnenschein et al., (2015) An image database of Drosophila melanogaster wings for phenomic and biometric analysis. GigaScience 4:25

    R 2 Updated May 15, 2015
  • Source code for SOAPdenovo2 from Luo et al., (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1:18

    C 18 Updated May 13, 2015
  • Source code from Guiblet et al., (2014) SmileFinder: a resampling-based approach to evaluate signatures of selection from genome-wide sets of matching allele frequency data in two or more diploid populations. GigaScience 2015, 4:1

    Python 2 Updated May 10, 2015
  • Source code from Al-Nasir and Shanahan, (2015) Investigation into the annotation of protocol sequencing steps in the Sequence Read Archive. GigaScience 4:23

    Updated May 7, 2015
  • An archive of the code used for evaluating assemblies from GAGE.

    Java Updated May 6, 2015
  • Source code and binaries for the SOAP2 alignment tool developed by BGI.

    C Updated Apr 25, 2015
  • Source code and binaries for the SOAP1 alignment tool developed by BGI.

    C++ Updated Apr 21, 2015
  • Source code for Kilianski et al., (2015) Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer. GigaScience 4:12

    Shell 2 Updated Mar 24, 2015
  • Source code from Zaritsky et al., (2015) Live time-lapse dataset of in vitro wound healing experiments. GigaScience 4:8

    Matlab Updated Feb 5, 2015