From a1627cd8c78eca6538b2a8c54c8c4b77a548f0bc Mon Sep 17 00:00:00 2001 From: Florian Wagner Date: Tue, 3 Apr 2018 16:18:52 +0200 Subject: [PATCH 1/2] Update changelog to v1.0.6 --- CHANGELOG.md | 183 ++++++++++++++------------------------------------- 1 file changed, 48 insertions(+), 135 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 69cb4f8a4..2a7d2633e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,155 +1,68 @@ # Changelog -## v1.0.5 (21/12/2017) - -#### building and distribution - -- [**building and distribution**] Make setup.py and conda's meta.yaml aware of pg.__version__ [#110](https://github.com/gimli-org/gimli/issues/110) - ---- - -## v1.0.4 (17/11/2017) +## v1.0.6 (03/04/2018) +#### new functionality +- `pg.show(geom, markers=True)` to inspect region and boundary markers of PLCs (also works for meshes) +- `mt.interpolateAlongCurve`, add simple extrapolation for to little curve bounds. +- `pg.warn(*args), pg.info(*args), pg.debug(*args)` etc. easier logging interface #14 +- `Pos=Vector3` alias +- `mt.createGrid` proxy function +- static `ndim` property to `pg.Vector`, `pg.Matrix` etc. +- convenience calls: `pg.x`, `pg.y`, and `pg.z` to return appropriate arrays for (data, mesh, R3Vector, ndarray, ..) +- core: improve mesh entities selection via (BVector), e.g., `mesh.cells(mesh.cellMarkers() == 1)` +is the same as `mesh.cells(pg.find(mesh.cellMarkers() == 1))` +- mplviewer new flag: showBoundary +- `pg.getConfigPath()` returns path to user config +- add more flexible way to define callables for boundary conditions + +#### other changes +- `pg.test()` compatible with numpy 1.14 (and 1.13) +- documentation compatible with Sphinx > 1.6 (new `-i` flag in sphinx-autogen) +- increased visibility of hyperlinks in documentation +- removed io/ path #124 + +#### backward compatibility + +- [**backward compatibility**] Backward compatibility of pg.interpolate [#131](https://github.com/gimli-org/gimli/issues/131) #### bug -- [**bug**][**building and distribution**] make -DPYVERSION more flexible [#21](https://github.com/gimli-org/gimli/issues/21) - -#### building and distribution - -- [**building and distribution**] Binary Installers for Windows [#73](https://github.com/gimli-org/gimli/issues/73) -- [**building and distribution**] support for g++ 7.x.x [#64](https://github.com/gimli-org/gimli/issues/64) -- [**building and distribution**] Support python 3.6 [#59](https://github.com/gimli-org/gimli/issues/59) -- [**building and distribution**] os - depending python/boost_python setting in cmake [#28](https://github.com/gimli-org/gimli/issues/28) -- [**building and distribution**] Make binary installers available [#2](https://github.com/gimli-org/gimli/issues/2) - -#### closed - -- [**closed**] petro.resistivityArchie() returning empty vector [#109](https://github.com/gimli-org/gimli/issues/109) -- [**closed**] ERT.Simulate -- AttributeError 'NoneType' object has no attribute 'N' [#108](https://github.com/gimli-org/gimli/issues/108) -- [**closed**] petro.resistivityArchie interpolation returns 'corrupt mesh' error [#107](https://github.com/gimli-org/gimli/issues/107) -- [**closed**] Argument Error in pg.RMatrix in winpython [#106](https://github.com/gimli-org/gimli/issues/106) -- [**closed**] Assigning regions to large numbers of cells [#105](https://github.com/gimli-org/gimli/issues/105) -- [**closed**] List of keywords arguments (**kwargs) for pg.show [#104](https://github.com/gimli-org/gimli/issues/104) -- [**closed**] "gimli" CodeBlocks project + "bert" [#103](https://github.com/gimli-org/gimli/issues/103) -- [**closed**] A simple DC resistivity modelling case [#102](https://github.com/gimli-org/gimli/issues/102) -- [**closed**] Expanded mesh interpolation documentation? [#101](https://github.com/gimli-org/gimli/issues/101) -- [**closed**] pg.mplviewer.drawModel to view data [#100](https://github.com/gimli-org/gimli/issues/100) -- [**closed**] Using a pointcloud with pg.meshtools.createMesh [#98](https://github.com/gimli-org/gimli/issues/98) -- [**closed**] Correct usage of the resample function from harmfit [#97](https://github.com/gimli-org/gimli/issues/97) -- [**closed**] Modifying grid.py (appendTriangleBoundary) to different y-max [#96](https://github.com/gimli-org/gimli/issues/96) -- [**closed**] Argument error in cg17/example-2_modelling.py [#95](https://github.com/gimli-org/gimli/issues/95) -- [**closed**] pg.createGrid fails with negative number range [#90](https://github.com/gimli-org/gimli/issues/90) -- [**closed**] Importing forward modeling results and performing ERT simulations [#84](https://github.com/gimli-org/gimli/issues/84) -- [**closed**] conda installation failing [#83](https://github.com/gimli-org/gimli/issues/83) -- [**closed**] ERT with forward modeling solution sourced from outside pygimli? [#82](https://github.com/gimli-org/gimli/issues/82) -- [**closed**] Install pygimli on ubuntu encounter the problem [#78](https://github.com/gimli-org/gimli/issues/78) -- [**closed**] How to install pyGIMLi for windows user ? [#76](https://github.com/gimli-org/gimli/issues/76) -- [**closed**] drawPLC [#71](https://github.com/gimli-org/gimli/issues/71) -- [**closed**] Pygimli Windows 7 Installation [#70](https://github.com/gimli-org/gimli/issues/70) -- [**closed**] slownessWyllie import error [#69](https://github.com/gimli-org/gimli/issues/69) -- [**closed**] Two tests are failing with py 2.7 only [#68](https://github.com/gimli-org/gimli/issues/68) -- [**closed**] Compilation problems on Windows 7 with MSys64 [#51](https://github.com/gimli-org/gimli/issues/51) -- [**closed**] Base gallery build on version-controlled .matplotlibrc [#49](https://github.com/gimli-org/gimli/issues/49) - -#### documentation - -- [**documentation**] New structure for examples on website [#63](https://github.com/gimli-org/gimli/issues/63) +- [**bug**] Plotting issue for multiple subplots in Jupyter Notebook [#125](https://github.com/gimli-org/gimli/issues/125) +- fix implementation of Neumann boundary conditions. #### enhancement -- [**enhancement**] automatic rvalue conversion from array(dtype=int|long) to pg.RVector on demand [#99](https://github.com/gimli-org/gimli/issues/99) -- [**enhancement**][**feature request**] HDF format support [#65](https://github.com/gimli-org/gimli/issues/65) -- [**enhancement**][**feature request**] custom rvalue converter from/to RMatrix [#17](https://github.com/gimli-org/gimli/issues/17) -- [**enhancement**][**feature request**] Allow user-defined fillValue in pg.interpolate [#16](https://github.com/gimli-org/gimli/issues/16) +- [**enhancement**] pg.meshtools.cellDataToNodeData does not take scalar fields [#120](https://github.com/gimli-org/gimli/issues/120) +- CellBrowser: Highlight style, click now toggle, data and mesh can be changed -#### feature request - -- [**feature request**] Easy python access to c++ inversion framework [#54](https://github.com/gimli-org/gimli/issues/54) -- [**feature request**] Importer: tetgen-1.4* and tetgen 1.5* [#7](https://github.com/gimli-org/gimli/issues/7) +#### closed issues +- [**closed**] Drawing a colorbar with pg.mplviewer.drawModel [#130](https://github.com/gimli-org/gimli/issues/130) +- [**closed**] 'MemoryError' for pb.invert [#129](https://github.com/gimli-org/gimli/issues/129) +- [**closed**] FDEM dataset [#122](https://github.com/gimli-org/gimli/issues/122) +- [**closed**] petro.resistivityArchie interpolation returns 'corrupt mesh' error [#107](https://github.com/gimli-org/gimli/issues/107) +- [**closed**] API doc not building with sphinx 1.6.3 [#74](https://github.com/gimli-org/gimli/issues/74) --- -## v0.91 (01/06/2017) +## v1.0.5 (22/12/2017) +Install with Ana- or Miniconda: -#### API change - -- [**API change**] Introduction of 2 new submodules [#33](https://github.com/gimli-org/gimli/issues/33) -- [**API change**] I want to remove cell.attribute() [#27](https://github.com/gimli-org/gimli/issues/27) - -#### bug - -- [**bug**] Cannot show rotated PLCs crossing y=0 due to bug in Triangle(-Wrapper) [#47](https://github.com/gimli-org/gimli/issues/47) -- [**bug**][**building and distribution**] triangle build on MacOSX [#24](https://github.com/gimli-org/gimli/issues/24) +``` bash +conda install pygimli=v1.0.5 +``` +#### Fixes: +- automatic RValue conversion for scalar numpy data types to pg.core long +- Crank-Nicolson solver is now working again with default theta setting #### building and distribution -- [**building and distribution**] boost 1.60 compatibility issues [#31](https://github.com/gimli-org/gimli/issues/31) -- [**building and distribution**] make curl installers work on CI platforms [#26](https://github.com/gimli-org/gimli/issues/26) -- [**building and distribution**] Gimli install [#23](https://github.com/gimli-org/gimli/issues/23) -- [**building and distribution**] Remove old und unused binary apps [#10](https://github.com/gimli-org/gimli/issues/10) -- [**building and distribution**] Reduce dependencies [#3](https://github.com/gimli-org/gimli/issues/3) - -#### closed - -- [**closed**] missing argument in polytools [#56](https://github.com/gimli-org/gimli/issues/56) -- [**closed**] Ubuntu: cmake issue - "cannot find -lpthreads" [#53](https://github.com/gimli-org/gimli/issues/53) -- [**closed**] Use castxml binaries to avoid clang and llvm related issues [#52](https://github.com/gimli-org/gimli/issues/52) -- [**closed**] Ship self-testing binaries [#50](https://github.com/gimli-org/gimli/issues/50) -- [**closed**] Problem with dependencies to libpython3.4m.so, libpython3.4m.so.1.0 and libboost_python-py34.so while making pygimli under python3.5 [#45](https://github.com/gimli-org/gimli/issues/45) -- [**closed**] Issue with gimli installation [#44](https://github.com/gimli-org/gimli/issues/44) -- [**closed**] Strange aspect of pyGIMLi logo [#42](https://github.com/gimli-org/gimli/issues/42) -- [**closed**] Some examples are broken due to API changes [#41](https://github.com/gimli-org/gimli/issues/41) -- [**closed**] castXML cannot be build with llvm-3.8 [#40](https://github.com/gimli-org/gimli/issues/40) -- [**closed**] Runtime error [#39](https://github.com/gimli-org/gimli/issues/39) -- [**closed**] Problem building pygimli with python3.5 [#38](https://github.com/gimli-org/gimli/issues/38) -- [**closed**] Make convertMesh gmsh compatible (also for anaconda users) [#37](https://github.com/gimli-org/gimli/issues/37) -- [**closed**] Problem with pygimli installation [#36](https://github.com/gimli-org/gimli/issues/36) -- [**closed**] Problem with castxml [#35](https://github.com/gimli-org/gimli/issues/35) -- [**closed**] Remove cppunit as a hard dependency [#34](https://github.com/gimli-org/gimli/issues/34) -- [**closed**] ImportError: No module named _pygimli_ [#32](https://github.com/gimli-org/gimli/issues/32) -- [**closed**] building castxml on ubuntu 14.04 [#30](https://github.com/gimli-org/gimli/issues/30) -- [**closed**] ImportError: dynamic module does not define init function (PyInit___pygimli_) [#29](https://github.com/gimli-org/gimli/issues/29) - -#### documentation - -- [**documentation**] Documentation issues [#12](https://github.com/gimli-org/gimli/issues/12) - -#### enhancement - -- [**enhancement**][**testing**] pg.test() writes files in current working directory [#43](https://github.com/gimli-org/gimli/issues/43) +- [**building and distribution**] Make setup.py and conda's meta.yaml aware of pg.__version__ [#110](https://github.com/gimli-org/gimli/issues/110) --- -## v0.9 (06/10/2015) - -#### API change - -- [**API change**][**bug**][**building and distribution**] make pygimli fails [#18](https://github.com/gimli-org/gimli/issues/18) - -#### bug - -- [**bug**][**documentation**] Documentation is not building with sphinx 1.3.1 [#11](https://github.com/gimli-org/gimli/issues/11) - -#### building and distribution - -- [**building and distribution**][**enhancement**] Avoid static link to libgimli.so in _pygimli_.so [#13](https://github.com/gimli-org/gimli/issues/13) -- [**building and distribution**] Force dependency update via cmake [#9](https://github.com/gimli-org/gimli/issues/9) -- [**building and distribution**] make: *** [pygimli] Error 2 [#8](https://github.com/gimli-org/gimli/issues/8) -- [**building and distribution**] Provide support for newer compilers via CastXML [#6](https://github.com/gimli-org/gimli/issues/6) - -#### closed - -- [**closed**] bin directory empty after make [#20](https://github.com/gimli-org/gimli/issues/20) - -#### enhancement - -- [**enhancement**][**feature request**] Array conversion methods for more/all vector/matrix formats [#5](https://github.com/gimli-org/gimli/issues/5) - -#### feature request - -- [**feature request**] Export triangle poly [#4](https://github.com/gimli-org/gimli/issues/4) -- [**feature request**] importer for plc (triangle) [#1](https://github.com/gimli-org/gimli/issues/1) - -#### testing +## v1.0.4 - Start of consequent versioning (22/12/2017) +Install with Ana- or Miniconda: -- [**testing**] pg.test() should consider tests in python/tests [#19](https://github.com/gimli-org/gimli/issues/19) +``` bash +conda install pygimli=v1.0.4 +``` \ No newline at end of file From 15336020da6c25eb868cef156c5a7cc94590a744 Mon Sep 17 00:00:00 2001 From: Florian Wagner Date: Tue, 3 Apr 2018 16:47:31 +0200 Subject: [PATCH 2/2] Add badges for latest release. --- README.md | 3 +++ doc/_templates/sidebar.html | 6 ++++++ 2 files changed, 9 insertions(+) diff --git a/README.md b/README.md index 8a579606b..b2d348e2b 100644 --- a/README.md +++ b/README.md @@ -11,6 +11,9 @@ Readme for Github repository only. (Get's selected before *.rst file) --> [![Code Health](https://landscape.io/github/gimli-org/gimli/master/landscape.svg)](https://landscape.io/github/gimli-org/gimli/master) [![license](https://img.shields.io/github/license/gimli-org/gimli.svg?style=flat-square)](https://pygimli.org/license.html) +[![release](https://img.shields.io/github/release/gimli-org/gimli.svg?style=flat-square)](https://github.com/gimli-org/gimli/releases/latest) +[![Github commits (since latest release)](https://img.shields.io/github/commits-since/gimli-org/gimli/latest.svg?style=flat-square)](https://github.com/gimli-org/gimli/tree/dev) + pyGIMLi is an open-source library for modelling and inversion and in geophysics. The object-oriented library provides management for structured and unstructured meshes in 2D and 3D, finite-element and finite-volume solvers, various geophysical forward operators, as well as Gauss-Newton based frameworks for constrained, joint and fully-coupled inversions with flexible regularization. diff --git a/doc/_templates/sidebar.html b/doc/_templates/sidebar.html index a39946666..a79ac7436 100644 --- a/doc/_templates/sidebar.html +++ b/doc/_templates/sidebar.html @@ -34,6 +34,11 @@

Gallery

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+

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+

+ Latest release tag +

Development version:

@@ -41,6 +46,7 @@

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Code Quality + Commits since latest release