diff --git a/javascript/ql/lib/semmle/javascript/frameworks/Next.qll b/javascript/ql/lib/semmle/javascript/frameworks/Next.qll
index 551d325f26af..a65fcdce44db 100644
--- a/javascript/ql/lib/semmle/javascript/frameworks/Next.qll
+++ b/javascript/ql/lib/semmle/javascript/frameworks/Next.qll
@@ -13,12 +13,31 @@ module NextJS {
    */
   PackageJson getANextPackage() { result.getDependencies().getADependency("next", _) }
 
+  bindingset[base, name]
+  pragma[inline_late]
+  private Folder getOptionalFolder(Folder base, string name) {
+    result = base.getFolder(name)
+    or
+    not exists(base.getFolder(name)) and
+    result = base
+  }
+
+  private Folder packageRoot() { result = getANextPackage().getFile().getParentContainer() }
+
+  private Folder srcRoot() { result = getOptionalFolder(packageRoot(), "src") }
+
+  private Folder appRoot() { result = srcRoot().getFolder("app") }
+
+  private Folder pagesRoot() { result = [srcRoot(), appRoot()].getFolder("pages") }
+
+  private Folder apiRoot() { result = [pagesRoot(), appRoot()].getFolder("api") }
+
   /**
    * Gets a "pages" folder in a `Next.js` application.
    * JavaScript files inside these folders are mapped to routes.
    */
   Folder getAPagesFolder() {
-    result = getANextPackage().getFile().getParentContainer().getFolder("pages")
+    result = pagesRoot()
     or
     result = getAPagesFolder().getAFolder()
   }
@@ -217,8 +236,7 @@ module NextJS {
    * the App Router (`app/api/`) Next.js 13+ structures.
    */
   Folder apiFolder() {
-    result =
-      getANextPackage().getFile().getParentContainer().getFolder(["pages", "app"]).getFolder("api") or
+    result = apiRoot() or
     result = apiFolder().getAFolder()
   }
 
diff --git a/javascript/ql/src/change-notes/2025-11-25-nextjs-project-layout.md b/javascript/ql/src/change-notes/2025-11-25-nextjs-project-layout.md
new file mode 100644
index 000000000000..7135aa3f2ed1
--- /dev/null
+++ b/javascript/ql/src/change-notes/2025-11-25-nextjs-project-layout.md
@@ -0,0 +1,4 @@
+---
+category: minorAnalysis
+---
+* Fixed a bug in the Next.js model that would cause the analysis to miss server-side taint sources in the `app/pages` folder.
diff --git a/javascript/ql/test/query-tests/Security/CWE-079/ReflectedXss/ReflectedXss.expected b/javascript/ql/test/query-tests/Security/CWE-079/ReflectedXss/ReflectedXss.expected
index e536364f805d..b488018d09d1 100644
--- a/javascript/ql/test/query-tests/Security/CWE-079/ReflectedXss/ReflectedXss.expected
+++ b/javascript/ql/test/query-tests/Security/CWE-079/ReflectedXss/ReflectedXss.expected
@@ -35,6 +35,8 @@
 | app/api/routeNextRequest.ts:15:20:15:23 | body | app/api/routeNextRequest.ts:4:22:4:31 | req.json() | app/api/routeNextRequest.ts:15:20:15:23 | body | Cross-site scripting vulnerability due to a $@. | app/api/routeNextRequest.ts:4:22:4:31 | req.json() | user-provided value |
 | app/api/routeNextRequest.ts:27:20:27:23 | body | app/api/routeNextRequest.ts:4:22:4:31 | req.json() | app/api/routeNextRequest.ts:27:20:27:23 | body | Cross-site scripting vulnerability due to a $@. | app/api/routeNextRequest.ts:4:22:4:31 | req.json() | user-provided value |
 | app/api/routeNextRequest.ts:31:27:31:30 | body | app/api/routeNextRequest.ts:4:22:4:31 | req.json() | app/api/routeNextRequest.ts:31:27:31:30 | body | Cross-site scripting vulnerability due to a $@. | app/api/routeNextRequest.ts:4:22:4:31 | req.json() | user-provided value |
+| app/pages/Next2.jsx:8:13:8:19 | req.url | app/pages/Next2.jsx:8:13:8:19 | req.url | app/pages/Next2.jsx:8:13:8:19 | req.url | Cross-site scripting vulnerability due to a $@. | app/pages/Next2.jsx:8:13:8:19 | req.url | user-provided value |
+| app/pages/Next2.jsx:15:13:15:19 | req.url | app/pages/Next2.jsx:15:13:15:19 | req.url | app/pages/Next2.jsx:15:13:15:19 | req.url | Cross-site scripting vulnerability due to a $@. | app/pages/Next2.jsx:15:13:15:19 | req.url | user-provided value |
 | etherpad.js:11:12:11:19 | response | etherpad.js:9:16:9:30 | req.query.jsonp | etherpad.js:11:12:11:19 | response | Cross-site scripting vulnerability due to a $@. | etherpad.js:9:16:9:30 | req.query.jsonp | user-provided value |
 | formatting.js:6:14:6:47 | util.fo ... , evil) | formatting.js:4:16:4:29 | req.query.evil | formatting.js:6:14:6:47 | util.fo ... , evil) | Cross-site scripting vulnerability due to a $@. | formatting.js:4:16:4:29 | req.query.evil | user-provided value |
 | formatting.js:7:14:7:53 | require ... , evil) | formatting.js:4:16:4:29 | req.query.evil | formatting.js:7:14:7:53 | require ... , evil) | Cross-site scripting vulnerability due to a $@. | formatting.js:4:16:4:29 | req.query.evil | user-provided value |
@@ -365,6 +367,8 @@ nodes
 | app/api/routeNextRequest.ts:15:20:15:23 | body | semmle.label | body |
 | app/api/routeNextRequest.ts:27:20:27:23 | body | semmle.label | body |
 | app/api/routeNextRequest.ts:31:27:31:30 | body | semmle.label | body |
+| app/pages/Next2.jsx:8:13:8:19 | req.url | semmle.label | req.url |
+| app/pages/Next2.jsx:15:13:15:19 | req.url | semmle.label | req.url |
 | etherpad.js:9:5:9:12 | response | semmle.label | response |
 | etherpad.js:9:16:9:30 | req.query.jsonp | semmle.label | req.query.jsonp |
 | etherpad.js:11:12:11:19 | response | semmle.label | response |
diff --git a/javascript/ql/test/query-tests/Security/CWE-079/ReflectedXss/ReflectedXssWithCustomSanitizer.expected b/javascript/ql/test/query-tests/Security/CWE-079/ReflectedXss/ReflectedXssWithCustomSanitizer.expected
index a4b02fa07491..2dceb5fa8071 100644
--- a/javascript/ql/test/query-tests/Security/CWE-079/ReflectedXss/ReflectedXssWithCustomSanitizer.expected
+++ b/javascript/ql/test/query-tests/Security/CWE-079/ReflectedXss/ReflectedXssWithCustomSanitizer.expected
@@ -34,6 +34,8 @@
 | app/api/routeNextRequest.ts:15:20:15:23 | body | Cross-site scripting vulnerability due to $@. | app/api/routeNextRequest.ts:4:22:4:31 | req.json() | user-provided value |
 | app/api/routeNextRequest.ts:27:20:27:23 | body | Cross-site scripting vulnerability due to $@. | app/api/routeNextRequest.ts:4:22:4:31 | req.json() | user-provided value |
 | app/api/routeNextRequest.ts:31:27:31:30 | body | Cross-site scripting vulnerability due to $@. | app/api/routeNextRequest.ts:4:22:4:31 | req.json() | user-provided value |
+| app/pages/Next2.jsx:8:13:8:19 | req.url | Cross-site scripting vulnerability due to $@. | app/pages/Next2.jsx:8:13:8:19 | req.url | user-provided value |
+| app/pages/Next2.jsx:15:13:15:19 | req.url | Cross-site scripting vulnerability due to $@. | app/pages/Next2.jsx:15:13:15:19 | req.url | user-provided value |
 | formatting.js:6:14:6:47 | util.fo ... , evil) | Cross-site scripting vulnerability due to $@. | formatting.js:4:16:4:29 | req.query.evil | user-provided value |
 | formatting.js:7:14:7:53 | require ... , evil) | Cross-site scripting vulnerability due to $@. | formatting.js:4:16:4:29 | req.query.evil | user-provided value |
 | live-server.js:6:13:6:50 | `<html> ... /html>` | Cross-site scripting vulnerability due to $@. | live-server.js:4:21:4:27 | req.url | user-provided value |
diff --git a/javascript/ql/test/query-tests/Security/CWE-079/ReflectedXss/app/pages/Next2.jsx b/javascript/ql/test/query-tests/Security/CWE-079/ReflectedXss/app/pages/Next2.jsx
new file mode 100644
index 000000000000..d6c2232e9571
--- /dev/null
+++ b/javascript/ql/test/query-tests/Security/CWE-079/ReflectedXss/app/pages/Next2.jsx
@@ -0,0 +1,19 @@
+export default function Post() {
+    return <span />;
+}
+
+Post.getInitialProps = async (ctx) => {
+    const req = ctx.req;
+    const res = ctx.res;
+    res.end(req.url); // $ Alert
+    return {}
+}
+
+export async function getServerSideProps(ctx) {
+    const req = ctx.req;
+    const res = ctx.res;
+    res.end(req.url); // $ Alert
+    return {
+        props: {}
+    }
+}
\ No newline at end of file