Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Bump snakemake from 7.14.0 to 7.14.1 in /dependencies/python #3355

Merged

Conversation

dependabot[bot]
Copy link
Contributor

@dependabot dependabot bot commented on behalf of github Sep 26, 2022

Bumps snakemake from 7.14.0 to 7.14.1.

Release notes

Sourced from snakemake's releases.

v7.14.1

7.14.1 (2022-09-23)

Bug Fixes

  • allocation of local ssds in k8s tests (#1870) (d0de4dc)
  • allow script directive to take pathlib Path (#1869) (12cdc96)
  • catch errors in remote.AUTO provider list (#1834) (c613ed2)
  • consistently use text output in conda shell commands and various little fixes for failing test cases due to conda package changes (#1864) (4234fe7)
  • declare associative arrays (#1844) (90ae449)
  • fix falsely triggered reruns if input files are obtained via workflow.source_path() (#1862) (2dc2e6a)
  • fixed typos (#1847) (a1e49b6)
  • k8s container volume mounts as list (#1868) (5c54df3)
  • None type error when invoking Workflow object manually (#1731) (dc45ccb)
  • request disk_mb resource from k8s (#1858) (f68f166)
  • respect shebang lines in post-deploy scripts (see deployment docs) (#1841) (c26c4b6)
Changelog

Sourced from snakemake's changelog.

7.14.1 (2022-09-23)

Bug Fixes

  • allocation of local ssds in k8s tests (#1870) (d0de4dc)
  • allow script directive to take pathlib Path (#1869) (12cdc96)
  • catch errors in remote.AUTO provider list (#1834) (c613ed2)
  • consistently use text output in conda shell commands and various little fixes for failing test cases due to conda package changes (#1864) (4234fe7)
  • declare associative arrays (#1844) (90ae449)
  • fix falsely triggered reruns if input files are obtained via workflow.source_path() (#1862) (2dc2e6a)
  • fixed typos (#1847) (a1e49b6)
  • k8s container volume mounts as list (#1868) (5c54df3)
  • None type error when invoking Workflow object manually (#1731) (dc45ccb)
  • request disk_mb resource from k8s (#1858) (f68f166)
  • respect shebang lines in post-deploy scripts (see deployment docs) (#1841) (c26c4b6)
Commits
  • 73e186a chore(main): release 7.14.1 (#1842)
  • 5c54df3 fix: k8s container volume mounts as list (#1868)
  • d0de4dc fix: allocation of local ssds in k8s tests (#1870)
  • 12cdc96 fix: allow script directive to take pathlib Path (#1869)
  • 2dc2e6a fix: fix falsely triggered reruns if input files are obtained via workflow.so...
  • 37857d6 chore(deps): bump actions/checkout from 1 to 3 (#1854)
  • f68f166 fix: request disk_mb resource from k8s (#1858)
  • 4234fe7 fix: consistently use text output in conda shell commands and various little ...
  • dc45ccb fix: None type error when invoking Workflow object manually (#1731)
  • a1e49b6 fix: fixed typos (#1847)
  • Additional commits viewable in compare view

Dependabot compatibility score

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot merge will merge this PR after your CI passes on it
  • @dependabot squash and merge will squash and merge this PR after your CI passes on it
  • @dependabot cancel merge will cancel a previously requested merge and block automerging
  • @dependabot reopen will reopen this PR if it is closed
  • @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
  • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Sep 26, 2022
@dependabot dependabot bot force-pushed the dependabot/pip/dependencies/python/snakemake-7.14.1 branch 3 times, most recently from 1deebb1 to 631415d Compare September 27, 2022 08:14
Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.14.0 to 7.14.1.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v7.14.0...v7.14.1)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot force-pushed the dependabot/pip/dependencies/python/snakemake-7.14.1 branch from 631415d to cb5c18a Compare September 27, 2022 08:27
@ferrarimarco ferrarimarco enabled auto-merge (squash) September 27, 2022 08:29
@ferrarimarco ferrarimarco merged commit abc2f61 into main Sep 27, 2022
1 check passed
@ferrarimarco ferrarimarco deleted the dependabot/pip/dependencies/python/snakemake-7.14.1 branch September 27, 2022 08:37
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
dependencies Pull requests that update a dependency file python Pull requests that update Python code
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant