diff --git a/README.md b/README.md
index b95042e..15542a3 100644
--- a/README.md
+++ b/README.md
@@ -530,7 +530,7 @@ The system supports Retrieval-Augmented Generation (RAG) for enhanced knowledge
 The easiest way to use the AI Development Agent is through the Streamlit web interface:
 
 ```bash
-streamlit run streamlit_app.py
+streamlit run apps/streamlit_app.py
 ```
 
 This will start the web application at `http://localhost:8501` where you can:
@@ -736,7 +736,9 @@ ai-dev-agent/
 ├── prompts/              # Prompt management
 │   ├── agent_prompt_loader.py # Agent prompt loading system
 │   └── __init__.py       # Prompt module initialization
-├── streamlit_app.py      # Streamlit web interface
+├── apps/
+│   ├── streamlit_app.py      # Main Streamlit web interface
+│   └── prompt_manager_app.py # Prompt management interface
 ├── main.py              # Main application entry point
 ├── requirements.txt     # Python dependencies
 ├── secrets.toml        # API keys and secrets (create this)
diff --git a/apps/__init__.py b/apps/__init__.py
new file mode 100644
index 0000000..bb68803
--- /dev/null
+++ b/apps/__init__.py
@@ -0,0 +1,10 @@
+"""
+Applications package for AI Development Agent.
+
+This package contains the user interface applications:
+- streamlit_app.py: Main AI Development Agent interface
+- prompt_manager_app.py: Prompt and RAG document management interface
+"""
+
+__version__ = "1.0.0"
+__author__ = "AI Development Agent Team"
\ No newline at end of file
diff --git a/prompt_manager_app.py b/apps/prompt_manager_app.py
similarity index 100%
rename from prompt_manager_app.py
rename to apps/prompt_manager_app.py
diff --git a/streamlit_app.py b/apps/streamlit_app.py
similarity index 100%
rename from streamlit_app.py
rename to apps/streamlit_app.py
diff --git a/TEST_ORGANIZATION_SUMMARY.md b/tests/TEST_ORGANIZATION_SUMMARY.md
similarity index 94%
rename from TEST_ORGANIZATION_SUMMARY.md
rename to tests/TEST_ORGANIZATION_SUMMARY.md
index 2c1add9..a90e7b0 100644
--- a/TEST_ORGANIZATION_SUMMARY.md
+++ b/tests/TEST_ORGANIZATION_SUMMARY.md
@@ -93,21 +93,21 @@ python tests/organize_tests.py --generate-index
 
 ### 2. Setup Script
 
-**File**: `scripts/setup_test_environment.py`
+**File**: `tests/setup_test_environment.py`
 
 **Commands**:
 ```bash
 # Setup complete test environment
-python scripts/setup_test_environment.py --setup
+python tests/setup_test_environment.py --setup
 
 # Validate test organization
-python scripts/setup_test_environment.py --validate
+python tests/setup_test_environment.py --validate
 
 # Run all tests
-python scripts/setup_test_environment.py --run-tests
+python tests/setup_test_environment.py --run-tests
 
 # Show help
-python scripts/setup_test_environment.py --help-info
+python tests/setup_test_environment.py --help-info
 ```
 
 ### 3. Pytest Configuration
@@ -213,7 +213,7 @@ The following files are **explicitly excluded** from the test organization rule:
 
 1. **Setup test environment**:
    ```bash
-   python scripts/setup_test_environment.py --setup
+   python tests/setup_test_environment.py --setup
    ```
 
 2. **Read the rules**:
@@ -249,7 +249,7 @@ The following files are **explicitly excluded** from the test organization rule:
 
 - **Detailed Rules**: `tests/TEST_ORGANIZATION_RULES.md`
 - **Test Index**: `tests/TEST_INDEX.md` (auto-generated)
-- **Setup Help**: `python scripts/setup_test_environment.py --help-info`
+- **Setup Help**: `python tests/setup_test_environment.py --help-info`
 - **Validation**: `python tests/organize_tests.py --validate`
 
 ## Conclusion
diff --git a/scripts/setup_test_environment.py b/tests/setup_test_environment.py
similarity index 99%
rename from scripts/setup_test_environment.py
rename to tests/setup_test_environment.py
index 37116bb..072abf6 100644
--- a/scripts/setup_test_environment.py
+++ b/tests/setup_test_environment.py
@@ -155,7 +155,7 @@ def show_test_help(self):
 - tests/security/ - Security and vulnerability tests
 
 Commands:
-- python scripts/setup_test_environment.py --setup
+- python tests/setup_test_environment.py --setup
 - python tests/organize_tests.py --validate
 - python tests/organize_tests.py --create-structure
 - pytest tests/ --cov=. --cov-report=html
diff --git a/tests/unit/test_enhanced_structured_outputs.py b/tests/unit/test_enhanced_structured_outputs.py
deleted file mode 100644
index 0519ecb..0000000
--- a/tests/unit/test_enhanced_structured_outputs.py
+++ /dev/null
@@ -1 +0,0 @@
- 
\ No newline at end of file
diff --git a/tests/unit/test_generated_files_fix.py b/tests/unit/test_generated_files_fix.py
deleted file mode 100644
index 0519ecb..0000000
--- a/tests/unit/test_generated_files_fix.py
+++ /dev/null
@@ -1 +0,0 @@
- 
\ No newline at end of file