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pplacer error - related to concat.updated.gene_map file? #322
Getting an error on yesterday's build of PhyloSift devel branch. Ran command on my iMac (but this input data is also on Edhar):
./phylosift.pl all ~/Desktop/PhyloSift/test_data/xeno_unassembled/xeno_raw_s_2_1_sequence.txt --debug
I built the xeno marker packages (but missing the taxon map), and tried runnning PhloSift to see if I was getting hits to the new markers. However, I got this error:
Removed 235 sequences on long pendant edges
This might be a mac specific issue? or perhaps an issue with my xeno marker package? On October 9th's version of devel I was getting another error (below). I will re-download last night's devel build to see if I can still replicate this.
Running /Users/hollybik/Desktop/PhyloSift/phylosift_devel_20121009/bin/../osx/pplacer --groups 15 --mmap-file abracadabra -o /Users/hollybik/Desktop/PhyloSift/phylosift_devel_20121009/PS_temp/xeno_raw_s_2_1_sequence.txt/treeDir/concat.updated.1.jplace --verbosity 0 -j 1 -c /Users/hollybik/share/phylosift/markers/concat.updated "/Users/hollybik/Desktop/PhyloSift/phylosift_devel_20121009/PS_temp/xeno_raw_s_2_1_sequence.txt/alignDir/concat.updated.1.fasta"