Validation of iVar
Repository contains scripts used to validation of trimming, consensus calling and variant calling using iVar.
. ├── data │ ├── alignments - Contains alignments of consensus sequences called using iVar, Geneious │ ├── ref - Reference sequences used │ └── variants - Variant csv and tsv files called using VarScan and iVar. ├── plots - Plots generated by R scripts and used to create validation figures. └── scripts - Contains R scripts used to create validation figures and validate results.