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alignments
ref
variants
ZI-merge-26_a.sorted.bam
ZI-merge-26_a.sorted.bam.bai
ZI-merge-26_a.sorted.select_region.R1.fastq
ZI-merge-26_a.sorted.select_region.R2.fastq
ZI-merge-26_a.sorted.select_region.bam
ZI-merge-26_a.sorted.select_region.cutadapt.depth
ZI-merge-26_a.sorted.select_region.depth
ZI-merge-26_a.sorted.select_region.ivar.depth
ZI-merge-26_a.sorted.select_region.ivar.trimmed.bam
ZI-merge-26_a.sorted.select_region.ivar.trimmed.sorted.bam
ZI-merge-26_a.sorted.select_region.name.bam
ZI-merge-26_a.sorted.select_region.realigned.bam
ZI-merge-26_a.sorted.select_region.realigned.bam.bai
ZI-merge-26_a.sorted.select_region.trimmed.cutadapt.R1.fastq
ZI-merge-26_a.sorted.select_region.trimmed.cutadapt.R2.fastq
ZI-merge-26_a.sorted.select_region.trimmed.cutadapt.sorted.bam
ZI-merge-26_a.sorted.select_region.trimmed.trimmomatic.R1.fastq
ZI-merge-26_a.sorted.select_region.trimmed.trimmomatic.R1.unpaired.fastq
ZI-merge-26_a.sorted.select_region.trimmed.trimmomatic.R2.fastq
ZI-merge-26_a.sorted.select_region.trimmed.trimmomatic.R2.unpaired.fastq
ZI-merge-26_a.sorted.select_region.trimmed.trimmomatic.sorted.bam
ZI-merge-26_a.sorted.select_region.trimmomatic.depth
ZI-merge-26_a.sorted.select_region.unpaired.fastq
ZI-merge-26a.25.consensus.fa
ZI-merge-26a.25.consensus.qual.txt
ZI-merge-26a.50.consensus.fa
ZI-merge-26a.50.consensus.qual.txt
ZI-merge-26a.90.consensus.fa
ZI-merge-26a.90.consensus.qual.txt
ZI-merge-26a.consensus.fa
ZI-merge-26a.consensus.qual.txt
ZI-merge-27_a.sorted.bam
ZI-merge-27_a.sorted.bam.bai
ZI-merge-27_a.sorted.select_region.R1.fastq
ZI-merge-27_a.sorted.select_region.R2.fastq
ZI-merge-27_a.sorted.select_region.bam
ZI-merge-27_a.sorted.select_region.cutadapt.depth
ZI-merge-27_a.sorted.select_region.depth
ZI-merge-27_a.sorted.select_region.ivar.depth
ZI-merge-27_a.sorted.select_region.ivar.trimmed.bam
ZI-merge-27_a.sorted.select_region.ivar.trimmed.sorted.bam
ZI-merge-27_a.sorted.select_region.name.bam
ZI-merge-27_a.sorted.select_region.realigned.bam
ZI-merge-27_a.sorted.select_region.realigned.bam.bai
ZI-merge-27_a.sorted.select_region.trimmed.cutadapt.R1.fastq
ZI-merge-27_a.sorted.select_region.trimmed.cutadapt.R2.fastq
ZI-merge-27_a.sorted.select_region.trimmed.cutadapt.sorted.bam
ZI-merge-27_a.sorted.select_region.trimmed.trimmomatic.R1.fastq
ZI-merge-27_a.sorted.select_region.trimmed.trimmomatic.R1.unpaired.fastq
ZI-merge-27_a.sorted.select_region.trimmed.trimmomatic.R2.fastq
ZI-merge-27_a.sorted.select_region.trimmed.trimmomatic.R2.unpaired.fastq
ZI-merge-27_a.sorted.select_region.trimmed.trimmomatic.sorted.bam
ZI-merge-27_a.sorted.select_region.trimmomatic.depth
ZI-merge-27_a.sorted.select_region.unpaired.fastq
ZI-merge-27a.25.consensus.fa
ZI-merge-27a.25.consensus.qual.txt
ZI-merge-27a.50.consensus.fa
ZI-merge-27a.50.consensus.qual.txt
ZI-merge-27a.90.consensus.fa
ZI-merge-27a.90.consensus.qual.txt
ZI-merge-27a.consensus.fa
ZI-merge-27a.consensus.qual.txt
ZI-merge-49_a.sorted.bam
ZI-merge-49_a.sorted.bam.bai
ZI-merge-50_a.sorted.bam
ZI-merge-50_a.sorted.bam.bai
simulate1.25.consensus.fa
simulate1.25.consensus.qual.txt
simulate1.50.consensus.fa
simulate1.50.consensus.qual.txt
simulate1.90.consensus.fa
simulate1.90.consensus.qual.txt
simulate1.R1.fastq
simulate1.R2.fastq
simulate1.align.sorted.bam
simulate1.align.sorted.bam.bai
simulate1.consensus.fa
simulate1.consensus.qual.txt
simulate2.25.consensus.fa
simulate2.25.consensus.qual.txt
simulate2.50.consensus.fa
simulate2.50.consensus.qual.txt
simulate2.90.consensus.fa
simulate2.90.consensus.qual.txt
simulate2.R1.fastq
simulate2.R2.fastq
simulate2.align.sorted.bam
simulate2.align.sorted.bam.bai
simulate2.consensus.fa
simulate2.consensus.qual.txt
simulate3.R1.fastq
simulate3.R2.fastq
simulate3.align.sorted.bam
simulate4.R1.fastq
simulate4.R2.fastq
simulate4.align.sorted.bam
test_primer.bed